| Sequence ID | dm3.chrX |
|---|---|
| Location | 14,935,716 – 14,935,815 |
| Length | 99 |
| Max. P | 0.836310 |
| Location | 14,935,716 – 14,935,815 |
|---|---|
| Length | 99 |
| Sequences | 4 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 82.13 |
| Shannon entropy | 0.27278 |
| G+C content | 0.35127 |
| Mean single sequence MFE | -15.27 |
| Consensus MFE | -11.93 |
| Energy contribution | -12.43 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.78 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.86 |
| SVM RNA-class probability | 0.836310 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 14935716 99 - 22422827 --------AUAUGCGUAGGUCUCCUCAGUUCAUCGCAUAUCCAGAGAAUAUCACAUUGUGUUUUCGGUA-UUUUU-UGUUUCUCUCUAAUCAUUCACUCAUCUUAUACU---------- --------(((((((..(..((....))..)..))))))).(((((((((((.............))))-)))))-))...............................---------- ( -14.32, z-score = -1.66, R) >droYak2.chrX 9129466 115 - 21770863 ----CAAGAUAUGCGUAGCGCUGCUCAGUUCAUCGCAUAUCCAGAUAUUAUCACAUAGUGUUUUCGGUAUUUUUUGUUUUUUUCUCUCCUCAUUAUCUCUUAUUAUCUCAUCCUUUACA ----...((((((((....(((....)))....)))))))).(((((.((....((((((.....((....................)).))))))....)).)))))........... ( -17.35, z-score = -2.38, R) >droSec1.super_32 383217 108 - 562834 AUAUCAACAUAUGCGUAGGUCUCCUCAGUUCAUCGCAUAUCCAGAGAAUAUCACAUUGUGUUUUCGGUAUUUUUU-UGUUUCUCUCUAAUCAUUCACUCAUCCUAUACU---------- (((((...(((((((..(..((....))..)..)))))))...((((((((......))))))))))))).....-.................................---------- ( -14.70, z-score = -1.50, R) >droSim1.chrU 12004094 108 - 15797150 AUAUCAACAUAUGCGUAGGUCUCCUCAGUUCAUCGCAUAUCCAGAGAAUAUCACAUUGUGUUUUCGGUAUUUUUU-UGUUUCUCUCUAAUCAUUCACUCAUCCUAUACU---------- (((((...(((((((..(..((....))..)..)))))))...((((((((......))))))))))))).....-.................................---------- ( -14.70, z-score = -1.50, R) >consensus ____CAACAUAUGCGUAGGUCUCCUCAGUUCAUCGCAUAUCCAGAGAAUAUCACAUUGUGUUUUCGGUAUUUUUU_UGUUUCUCUCUAAUCAUUCACUCAUCCUAUACU__________ ........(((((((..(..((....))..)..)))))))((.((((((((......)))))))))).................................................... (-11.93 = -12.43 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:45:07 2011