| Sequence ID | dm3.chrX |
|---|---|
| Location | 14,923,702 – 14,923,841 |
| Length | 139 |
| Max. P | 0.949659 |
| Location | 14,923,702 – 14,923,841 |
|---|---|
| Length | 139 |
| Sequences | 5 |
| Columns | 145 |
| Reading direction | forward |
| Mean pairwise identity | 62.77 |
| Shannon entropy | 0.60863 |
| G+C content | 0.40877 |
| Mean single sequence MFE | -29.74 |
| Consensus MFE | -11.49 |
| Energy contribution | -13.53 |
| Covariance contribution | 2.04 |
| Combinations/Pair | 1.31 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.39 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.55 |
| SVM RNA-class probability | 0.949659 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 14923702 139 + 22422827 AUUCAAUCACAUCACUUCAGAGUGAUCUAAACUAAUCUGAAAGCACAUGUUCCAACUAAAAGCAAUCUCGGAAACCCUGGGAUUUCUUGAGAAAUCCUCAGCUCUUCGCUGCUUUCCAUUCACUCUUGAGGGCCGAGGU------ ..............(((((((((((.............((((((....((....))....(((......(....).((((((((((....))))))).)))......)))))))))...)))))).)))))........------ ( -33.19, z-score = -1.01, R) >droSim1.chrX 11510819 122 + 17042790 AUUCAAUCACAUAACUUCAGAGUGGUCUAAACUAAUCUGAAAGCACA-----------------AUCUCGCAAACCCUGGGAUUUCUUCUGAAAUCCUCAGCUCUUCGCUGCUUUCCAUUCACUCUUAAGGGCCGAGGU------ ...............((((((.((((....)))).))))))......-----------------((((((....((((((((((((....))))))))((((.....)))).................)))).))))))------ ( -32.60, z-score = -3.05, R) >droSec1.super_32 378843 122 + 562834 AUUCAAUCACAUCACUUCAGAGUGAUCUAAACAAAUCUGAAAGCACA-----------------AUCUCGCAAACCCUGGGAUUUCUUCUGAAAUCCUCAGCUCUUCGCUGCUUUCCAUUCACUCUUAAGGGCCGAGGU------ ..........((((((....)))))).....................-----------------((((((....((((((((((((....))))))))((((.....)))).................)))).))))))------ ( -28.80, z-score = -2.01, R) >droEre2.scaffold_4690 6668725 116 - 18748788 AUUUAACGGCAUCACUUCGAAGUGAACUAAGCUAAUCAGAAAGCACA---------------------GUGAAUCUGGGGGAUUUCUUGAGAAAUGCUCUGCUCUGGUCGGCUUUCUAUUCAC--UUAAGGGCCGAGGU------ ......((((....(((..(((((((..((((..((((((..(((((---------------------(.....)))(((.(((((....))))).))))))))))))..))))....)))))--))))).))))....------ ( -39.50, z-score = -3.04, R) >droGri2.scaffold_15203 8728722 122 + 11997470 UUACUAAUAAAUAAUACCAAAAU-ACUCAGACCAAUCUUGAUGAAAU---------------------UGUUUUUCUCACAAUUUCUCCU-AAAUUUCAAUAUUUUGAUCGUUACCAAUAUUCUGAUCGCUGACUGUAUAGCCAC .......................-..(((((........((.(((((---------------------(((.......)))))))))).(-((...((((....))))...))).......)))))..((((......))))... ( -14.60, z-score = -1.22, R) >consensus AUUCAAUCACAUCACUUCAGAGUGAUCUAAACUAAUCUGAAAGCACA_________________AUCUCGCAAACCCUGGGAUUUCUUCUGAAAUCCUCAGCUCUUCGCUGCUUUCCAUUCACUCUUAAGGGCCGAGGU______ .............((((((((((((.............((((((..................................((((((((....)))))))).(((.....)))))))))...)))))))........)))))...... (-11.49 = -13.53 + 2.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:45:06 2011