| Sequence ID | dm3.chr2L |
|---|---|
| Location | 995,916 – 996,037 |
| Length | 121 |
| Max. P | 0.500000 |
| Location | 995,916 – 996,037 |
|---|---|
| Length | 121 |
| Sequences | 3 |
| Columns | 138 |
| Reading direction | forward |
| Mean pairwise identity | 79.02 |
| Shannon entropy | 0.28914 |
| G+C content | 0.28325 |
| Mean single sequence MFE | -27.17 |
| Consensus MFE | -19.51 |
| Energy contribution | -20.19 |
| Covariance contribution | 0.68 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.47 |
| Structure conservation index | 0.72 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr2L 995916 121 + 23011544 ACUACAUAGAUAUAUUACGAUUAGUUAGUAAUUUGUAGAGGAAAACUCUACUA--------AUUGGUAGGGAUUCUUGCGAAAAAAUCAAUGCCUA---------AUGGAUAUAUGUGGGUAUAAGAUAGGUAUAUUU .(((((((....(((((............((((.((((((.....)))))).)--------)))((((..((((.((....)).))))..))))))---------)))....)))))))................... ( -26.60, z-score = -1.93, R) >droSim1.chr2L 979702 134 + 22036055 ---AC-UAGAUAUAUUUCGAUUACUUAGUAAUUAGUAGAUUAAAAGUCUACUAUGAACGUAGUUUGUAGGGAUUCUUGCAAAGAAAUCAAUGCUUAUGGAUAUAUAUAUGUAUAUAUAGAUAGAAGAUAGGCAUAUUU ---..-.......(((((.........((...((((((((.....))))))))...))....((((((((....)))))))))))))..((((((((...(((.(((((....))))).)))....)))))))).... ( -27.10, z-score = -1.03, R) >droSec1.super_14 959203 134 + 2068291 ---AC-UAGAUAUAUUAUGAUUACUUAGUAAUUUGCAGAGGAAAACUCUACUAUGAACGUAGUUGGUAGGGAUUCUUGCAAAGAAAUCAAUGCUUAUGGAUAUACAUAUGUAUAUGUAGAUAAAAGAUAGGCAUAUUU ---..-..(((.(((((........))))).((((((.((((...((((((((..........)))))))).))))))))))...))).((((((((.....((((((....))))))........)))))))).... ( -27.82, z-score = -1.43, R) >consensus ___AC_UAGAUAUAUUACGAUUACUUAGUAAUUUGUAGAGGAAAACUCUACUAUGAACGUAGUUGGUAGGGAUUCUUGCAAAGAAAUCAAUGCUUAUGGAUAUA_AUAUGUAUAUGUAGAUAAAAGAUAGGCAUAUUU ..................((((.(((........((((((.....))))))..............(((((....))))).))).)))).((((((((.....((((((....))))))........)))))))).... (-19.51 = -20.19 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:07:31 2011