| Sequence ID | dm3.chrX |
|---|---|
| Location | 14,896,442 – 14,896,534 |
| Length | 92 |
| Max. P | 0.714759 |
| Location | 14,896,442 – 14,896,534 |
|---|---|
| Length | 92 |
| Sequences | 4 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 88.74 |
| Shannon entropy | 0.18006 |
| G+C content | 0.48561 |
| Mean single sequence MFE | -27.00 |
| Consensus MFE | -23.46 |
| Energy contribution | -23.27 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.87 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.714759 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 14896442 92 + 22422827 UGCGCUU--UAA---------CAAUCGGAUCUGGGAUCUGAGUAGCCGCUAUACGGUAUCCAGAGACCGCGAUCUGGCAUUCAGCAAGAAACGAAACAUACAC ...(((.--...---------...((((((((((..((((..((.(((.....)))))..))))..))).))))))).....))).................. ( -25.50, z-score = -1.75, R) >droSec1.super_32 352429 92 + 562834 UGCGCUUUAUCAAU-----------CGGAUCUGGGAUCUGAGUAGCCGCUAUACGGUAUCCAGAGUCCGCGAUCUGGCAUUCAGCAAGAAACGAAACAUACAC ...(((..((...(-----------(((((((((..((((..((.(((.....)))))..))))..))).))))))).))..))).................. ( -24.70, z-score = -0.96, R) >droYak2.chrX 9097456 94 + 21770863 UGCGCUU--UUAAU-------UAAGCGGAUCUGGGAUCUGAGUAGCCGCUAUACGGUAUCCAGGGUCCGCGAUCUGGCAUUCAGCAAGAAACGAAACAUAAAC .((((((--.....-------.))))((((((.(((((((.((((...)))).))).)))).))))))))..(((.((.....)).))).............. ( -28.10, z-score = -1.77, R) >droEre2.scaffold_4690 6636917 103 - 18748788 UGCGCUUUAUCAAUCGGAUCUGAAUCGGAUCUGGGAUCUGAGUAGCCGCUAUACGGUAUCCAGAGACCGCGAUCUGGCAUUCAGCAAGAAACGAAACAUACAC .............(((..(((....(((((((((..((((..((.(((.....)))))..))))..))).))))))((.....)).)))..)))......... ( -29.70, z-score = -1.50, R) >consensus UGCGCUU__UCAAU________AAUCGGAUCUGGGAUCUGAGUAGCCGCUAUACGGUAUCCAGAGACCGCGAUCUGGCAUUCAGCAAGAAACGAAACAUACAC .........................(((((((((..((((..((.(((.....)))))..))))..))).))))))((.....)).................. (-23.46 = -23.27 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:45:02 2011