Locus 14697

Sequence ID dm3.chrX
Location 14,885,078 – 14,885,153
Length 75
Max. P 0.935087
window20231 window20232

overview

Window 1

Location 14,885,078 – 14,885,153
Length 75
Sequences 6
Columns 80
Reading direction forward
Mean pairwise identity 73.73
Shannon entropy 0.50688
G+C content 0.56388
Mean single sequence MFE -20.20
Consensus MFE -15.71
Energy contribution -15.27
Covariance contribution -0.44
Combinations/Pair 1.33
Mean z-score -0.65
Structure conservation index 0.78
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.65
SVM RNA-class probability 0.775410
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 14885078 75 + 22422827
CUCUACCUCUACCACCUGCCA--CCAC---GUAAUGCCAACAAAUUGGGGCUGCGAUGGCAGCCCGCCGGCACUUUUGAG
......(((.......((((.--....---.((((........))))(((((((....)))))))...)))).....))) ( -21.90, z-score =  -1.35, R)
>droEre2.scaffold_4690 6625695 75 - 18748788
CUCUGCCUUUGCCGCCUGCC-----AACCCGUAAUGCCAACAAAUUGGGGCUGCGAUGGCAGCCCGCCGGCACUUUUGAG
(((......(((((((((((-----(...((((.(.((((....)))).).)))).))))))...).))))).....))) ( -24.60, z-score =  -0.51, R)
>droYak2.chrX 9084824 80 + 21770863
CUGUACCCUUGCCACCUGCCCACCUAACCCGUAAUUCCAACGAAUUGGGGCUACGAUGGCAGCCCGCCGGCACUUUUGAG
.........((((..(((((....((.(((.((((((....))))))))).))....)))))......))))........ ( -19.30, z-score =  -0.28, R)
>droSec1.super_32 341245 78 + 562834
CUCUACCUCUACCACCUGCCA--CCACCCCGUAAUGCCAACAAAUUGGGGCUGCGAUGGCAGCCCGCCGGCACUUUUGAG
......(((.......((((.--........((((........))))(((((((....)))))))...)))).....))) ( -21.90, z-score =  -1.23, R)
>droSim1.chrX 11487588 78 + 17042790
CUCUACCUCUACCACCUGCCA--CCACCCCGUAAUGCCAACAAAUUGGGGCUGCGAUGGCAGCCCGCCGGCACUUUUGAG
......(((.......((((.--........((((........))))(((((((....)))))))...)))).....))) ( -21.90, z-score =  -1.23, R)
>droMoj3.scaffold_6473 15127611 64 - 16943266
---CUCCUUUGCUGGCAGCUG--UUGCUUUUUAAUACAAACAAAUUGAGGUGGC-AUAGCAAUUUUUGAG----------
---(((..((((((.....((--(..((((................))))..))-))))))).....)))---------- ( -11.59, z-score =   0.70, R)
>consensus
CUCUACCUCUACCACCUGCCA__CCACCCCGUAAUGCCAACAAAUUGGGGCUGCGAUGGCAGCCCGCCGGCACUUUUGAG
................((((...........((((........))))(((((((....)))))))...))))........ (-15.71 = -15.27 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 2

Location 14,885,078 – 14,885,153
Length 75
Sequences 6
Columns 80
Reading direction reverse
Mean pairwise identity 73.73
Shannon entropy 0.50688
G+C content 0.56388
Mean single sequence MFE -27.92
Consensus MFE -16.95
Energy contribution -17.70
Covariance contribution 0.75
Combinations/Pair 1.28
Mean z-score -1.50
Structure conservation index 0.61
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.39
SVM RNA-class probability 0.935087
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 14885078 75 - 22422827
CUCAAAAGUGCCGGCGGGCUGCCAUCGCAGCCCCAAUUUGUUGGCAUUAC---GUGG--UGGCAGGUGGUAGAGGUAGAG
(((......(((((((((((((....)))))))......))))))(((((---.((.--...)).))))).)))...... ( -28.90, z-score =  -1.53, R)
>droEre2.scaffold_4690 6625695 75 + 18748788
CUCAAAAGUGCCGGCGGGCUGCCAUCGCAGCCCCAAUUUGUUGGCAUUACGGGUU-----GGCAGGCGGCAAAGGCAGAG
(((.....(((((.((((((((....))))))).....(((..((.......)).-----.)))).)))))......))) ( -32.40, z-score =  -1.75, R)
>droYak2.chrX 9084824 80 - 21770863
CUCAAAAGUGCCGGCGGGCUGCCAUCGUAGCCCCAAUUCGUUGGAAUUACGGGUUAGGUGGGCAGGUGGCAAGGGUACAG
.......(((((.((.(.(((((..(.((((((.(((((....)))))..)))))).)..))))).).))...))))).. ( -35.00, z-score =  -3.23, R)
>droSec1.super_32 341245 78 - 562834
CUCAAAAGUGCCGGCGGGCUGCCAUCGCAGCCCCAAUUUGUUGGCAUUACGGGGUGG--UGGCAGGUGGUAGAGGUAGAG
........((((.((.(.((((((((...(((((....((....))....)))))))--)))))).).))...))))... ( -31.60, z-score =  -1.78, R)
>droSim1.chrX 11487588 78 - 17042790
CUCAAAAGUGCCGGCGGGCUGCCAUCGCAGCCCCAAUUUGUUGGCAUUACGGGGUGG--UGGCAGGUGGUAGAGGUAGAG
........((((.((.(.((((((((...(((((....((....))....)))))))--)))))).).))...))))... ( -31.60, z-score =  -1.78, R)
>droMoj3.scaffold_6473 15127611 64 + 16943266
----------CUCAAAAAUUGCUAU-GCCACCUCAAUUUGUUUGUAUUAAAAAGCAA--CAGCUGCCAGCAAAGGAG---
----------(((.....(((((..-((...((....((((((........))))))--.))..)).)))))..)))--- (  -8.00, z-score =   1.04, R)
>consensus
CUCAAAAGUGCCGGCGGGCUGCCAUCGCAGCCCCAAUUUGUUGGCAUUACGGGGUGG__UGGCAGGUGGCAAAGGUAGAG
......((((((((((((((((....)))))))......))))))))).............((.....)).......... (-16.95 = -17.70 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:45:00 2011