| Sequence ID | dm3.chrX |
|---|---|
| Location | 14,880,971 – 14,881,070 |
| Length | 99 |
| Max. P | 0.820204 |
| Location | 14,880,971 – 14,881,070 |
|---|---|
| Length | 99 |
| Sequences | 5 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 90.65 |
| Shannon entropy | 0.16546 |
| G+C content | 0.52451 |
| Mean single sequence MFE | -33.68 |
| Consensus MFE | -31.60 |
| Energy contribution | -31.76 |
| Covariance contribution | 0.16 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.33 |
| Structure conservation index | 0.94 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.80 |
| SVM RNA-class probability | 0.820204 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 14880971 99 + 22422827 GUCAGACAGGGCGGAGACUCUUCUGGACAUUUCCCUUUUGGGAGACUUGACAGCUAAGAGGAUUUGCCCGAGAUUGCCGGAGAUUUCUUGCCCCUCUUG ........(((((((..((((((((....((((((....)))))).....)))..)))))..)))))))(((...((.((......)).))..)))... ( -34.20, z-score = -1.41, R) >droSim1.chrX 11483594 98 + 17042790 GUCAGACAGGGCGGAGACUCUUCUGGACAUUUCCCUUU-GGGAGACUUGACAGCUAAGAGGAUUUGCCCGAGAUUGCAGGAGAUUUCUUGCCCCUCUUG ........(((((((..((((((((....((((((...-)))))).....)))..)))))..)))))))(((...(((((......)))))..)))... ( -35.90, z-score = -1.90, R) >droSec1.super_32 337067 98 + 562834 GUCAGACAGGGCGGAGACUCUUCUGGACAUUUCCCUUU-GGGAGACUUGACAGCUAAGAGGAUUUUCCCGAGAUUGCAGGAGAUUUCUUGCCCCUCUUG ........(((..((..((((((((....((((((...-)))))).....)))..)))))..))..)))(((...(((((......)))))..)))... ( -30.50, z-score = -0.29, R) >droYak2.chrX 9080791 98 + 21770863 GACAGACAGGGCGGAGACUCUGCUGCGCAUUUCCCUUU-GGGAGACUUGACGGCUAAGAGGAUUUGUCCGAGAUUGCAGGAGAUUUCUUGCCACUCUUG ........(((((((..((((((((((..((((((...-))))))..)).))))..))))..)))))))(((...(((((......)))))..)))... ( -36.30, z-score = -2.40, R) >droEre2.scaffold_4690 6621573 97 - 18748788 GACAGACAGGGCAGUUACUCUUCUGGACAUUUUCCCUU-GGGAGGCUUCA-GGCUAAGAGGAUUUGCCCGAGACUGCAGCAGAUUUCCUGCCCCUCAUG ........((((((...((((((((((...(((((...-.))))).))))-))...))))...))))))(((...((((........))))..)))... ( -31.50, z-score = -0.65, R) >consensus GUCAGACAGGGCGGAGACUCUUCUGGACAUUUCCCUUU_GGGAGACUUGACAGCUAAGAGGAUUUGCCCGAGAUUGCAGGAGAUUUCUUGCCCCUCUUG ........(((((((..((((((((....((((((....)))))).....)))..)))))..)))))))(((...(((((......)))))..)))... (-31.60 = -31.76 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:44:58 2011