| Sequence ID | dm3.chrX |
|---|---|
| Location | 14,876,942 – 14,877,040 |
| Length | 98 |
| Max. P | 0.659697 |
| Location | 14,876,942 – 14,877,040 |
|---|---|
| Length | 98 |
| Sequences | 5 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 83.64 |
| Shannon entropy | 0.28020 |
| G+C content | 0.34646 |
| Mean single sequence MFE | -21.10 |
| Consensus MFE | -15.26 |
| Energy contribution | -15.26 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.72 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.659697 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 14876942 98 + 22422827 -AAAAAAAAACAAUAUUCUUAGAAACAGAUGUAAAUCAAAGUUGAAAAGGGUUCAAAUGUCGUCUUAAAUAUUCAUUGACAUCUGUUGAGCCAACAUCG-------- -..........................(((((...(((....)))....(((((((((((((..............))))))...))))))).))))).-------- ( -18.14, z-score = -2.14, R) >droEre2.scaffold_4690 6617704 94 - 18748788 -----AUGAACUAUAUGCUGAUAAGCAGAUGUAAAUCAAAGUUGAAAAGGGUUCAAGUGUCGGCUUGAAUAUUCAGAGACAUCUGUUGAGCUGACGUCG-------- -----.((((((...((((....))))(((....)))............)))))).(((((((((..(.....((((....)))))..)))))))).).-------- ( -27.60, z-score = -2.73, R) >droYak2.chrX 9076681 99 + 21770863 UGGUAAUAAGCUUUAUUCUGGGAAACAGACGUAAAUCAAAGUUGAGAAGGCCUCAAAUGUCGUUUUAAAUAUUCAGUGACAUCUGUUGAGCCAACAUCG-------- ((((.......(((((((((.....)))).)))))((((..(((((.....)))))((((((..............))))))...))))))))......-------- ( -17.44, z-score = 0.19, R) >droSec1.super_32 333060 107 + 562834 AAAAAAAAAACAAUAUUCUGAGAAACAGAUGUAAAUCAAAGUUGAAAAGGGUUCAAAUGUCGGUUUAAAUAUUCAGUGACAUCUGUUGAGCCGACAUCGCAGCAUCG ...........................(((((.........(((((.....)))))((((((((((((.....(((......)))))))))))))))....))))). ( -22.90, z-score = -2.02, R) >droSim1.chrX 11479614 99 + 17042790 AAAAAAAAAACAAUAUUCUGAGAAACAGAUGUAAAUCAAAGUUGAAAAGGGUUCAAAUGUCGGUUUAAAUAUUCAGUGACAUCUGUUGAGCCGACAUCG-------- ................((((.....))))............(((((.....)))))((((((((((((.....(((......)))))))))))))))..-------- ( -19.40, z-score = -1.72, R) >consensus _AAAAAAAAACAAUAUUCUGAGAAACAGAUGUAAAUCAAAGUUGAAAAGGGUUCAAAUGUCGGUUUAAAUAUUCAGUGACAUCUGUUGAGCCGACAUCG________ ...........................(((((...(((....)))....(((((((((((((..............))))))...))))))).)))))......... (-15.26 = -15.26 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:44:58 2011