| Sequence ID | dm3.chrX |
|---|---|
| Location | 14,876,401 – 14,876,484 |
| Length | 83 |
| Max. P | 0.552434 |
| Location | 14,876,401 – 14,876,484 |
|---|---|
| Length | 83 |
| Sequences | 8 |
| Columns | 84 |
| Reading direction | forward |
| Mean pairwise identity | 61.48 |
| Shannon entropy | 0.82608 |
| G+C content | 0.39624 |
| Mean single sequence MFE | -14.30 |
| Consensus MFE | -4.11 |
| Energy contribution | -4.49 |
| Covariance contribution | 0.38 |
| Combinations/Pair | 1.56 |
| Mean z-score | -1.20 |
| Structure conservation index | 0.29 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.552434 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 14876401 83 + 22422827 UCUGCCGUCUUGUUGACAUUUCAGGUUGAGUUGUCAGCUCCCAAAAGUUGAUCCCAAUACA-AAAUUCUCAAUACAAGUUAUAG .(((..(((.....)))....)))((((((..(((((((......))))))).........-.....))))))........... ( -12.99, z-score = -0.76, R) >droSim1.chrX 11479092 83 + 17042790 UCUGCCGUCUUGUUGACAUUUCAGGUUGAGUUGUCAGCUCCCAAACGCCGAUCCCAAUACA-AAAUUCUCAAUACAAGAUAUAG ......((((((((((((.(((.....))).)))))((........)).............-...........))))))).... ( -13.80, z-score = -0.97, R) >droSec1.super_32 332524 83 + 562834 UCUGCCGUCUUGUUGACAUUUCAGGUUGAGUUGUCAGCUCCCAAACGCUGAUCCCAAUACA-AAAUUCUCAACACAAGAUAUAG ......((((((((((....))).((((((..((((((........)))))).........-.....))))))))))))).... ( -19.09, z-score = -2.50, R) >droYak2.chrX 9076145 83 + 21770863 UCUGUCGGCUUGUUGACAUUUCAGGUUGAGUUGUCAGCUCCCAAAAGCUAAGCCCAAUACA-AAAUUCUCAAUACAAGAUAUAG ......((((((.(((((.(((.....))).)))))(((......))))))))).......-...................... ( -15.90, z-score = -1.07, R) >droEre2.scaffold_4690 6617230 79 - 18748788 CCUGCCGGCUUGUUGACAUUUCAGGUUGAGUUGUCAGCUCCCAAAAGCAAAGCCC----CA-AAAUUCUCAAUACAAGACAUAG ......(((((..(((((.(((.....))).)))))(((......))).))))).----..-...................... ( -15.70, z-score = -0.79, R) >droPer1.super_2798 5177 84 - 5318 GUUUUCCACCUAUUAAUAUUUUAGGUUGAGUUGUCGACUAGCCGCAAAUUGCCAAAGGAAAUGAGUGCUCGAUACUCGAUCCUG .....................((((((((((.(((((...((.((..(((.((...)).)))..))))))))))))))).)))) ( -17.00, z-score = -0.83, R) >droWil1.scaffold_180702 4106557 70 + 4511350 -----AUUCCCGUUGACAUUUCCCAUCGAAUUGUCA--CCCAAAAUGAAAAGCCAAAGAAA-UAAAAUCAAAUAAAAG------ -----........(((((.(((.....))).)))))--.......................-................------ ( -6.40, z-score = -1.98, R) >droVir3.scaffold_12928 5761362 73 - 7717345 CCUGUCAUAUCCUUGCCAGAGCUUUUGCAAUGGCCAGUUGUUAAAUUGCUGCUGAAUUUAUUAUAAUUAAAAU----------- ..............((((..((....))..))))((((.((......)).))))...................----------- ( -13.50, z-score = -0.71, R) >consensus UCUGCCGUCUUGUUGACAUUUCAGGUUGAGUUGUCAGCUCCCAAAAGCUAAGCCCAAUACA_AAAUUCUCAAUACAAGAUAUAG ............((((((.(((.....))).))))))............................................... ( -4.11 = -4.49 + 0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:44:57 2011