| Sequence ID | dm3.chrX |
|---|---|
| Location | 14,874,576 – 14,874,650 |
| Length | 74 |
| Max. P | 0.542878 |
| Location | 14,874,576 – 14,874,650 |
|---|---|
| Length | 74 |
| Sequences | 6 |
| Columns | 89 |
| Reading direction | reverse |
| Mean pairwise identity | 66.12 |
| Shannon entropy | 0.56793 |
| G+C content | 0.42069 |
| Mean single sequence MFE | -14.55 |
| Consensus MFE | -7.82 |
| Energy contribution | -8.27 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.46 |
| Mean z-score | -0.80 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.542878 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 14874576 74 - 22422827 ---------------ACCGUUGGGUGACUAAGGAAAACUACAGAUAGUCGGCGGAAAAAAACUGCAAAAGUCAGCUUCUGGUAAGUCAA ---------------((((..((.(((((.......((((....))))..((((.......))))...))))).))..))))....... ( -17.10, z-score = -1.09, R) >droWil1.scaffold_180702 4104872 84 - 4511350 AGUAAGUGACUUUUUAUAAUUAGAU-AUUAAAGAGAGAGGCAAGCAAACACCAAUUAAUAGAAAGAG----UAAUAGAAGGGAAAGCAA .....((..((((((((.(((...(-(((((........(....).........)))))).....))----).))))))))....)).. ( -7.73, z-score = -0.71, R) >droSim1.chrX 11477274 74 - 17042790 ---------------ACCGUUGGGUAACUAAGGGAAACUACAGAUAGUCGGCGGAAAAAAAAUGCAUAAGUCAGCUUCUGGUGAGUCAA ---------------.(((((((.((.((..((....))..)).)).)))))))................(((.(....).)))..... ( -17.40, z-score = -1.33, R) >droSec1.super_32 330681 73 - 562834 ---------------ACCGUUGGGUAACUAAGGGAAACUACAGAUAGUCGGCGG-AAAAAAAUGCAUAAGUCAGCUUCUGGUGAGUCAA ---------------.(((((((.((.((..((....))..)).)).)))))))-...............(((.(....).)))..... ( -17.40, z-score = -1.27, R) >droYak2.chrX 9074381 67 - 21770863 ---------------ACCGCUGGGUAACUAAGGGACACUACAGAUAGUCGGCGGAAAAAGAAUG-------CAGCUUCUGGUGAGUCAA ---------------.(((((((.((.((..((....))..)).)).))))))).....((...-------((.(....).))..)).. ( -17.50, z-score = -0.93, R) >droEre2.scaffold_4690 6615536 65 + 18748788 ---------------AUCGCUGGGUAACUAAGGAAAACUACUGAUAGUCGGCGG--AAAAAAUG-------CAGCUUCUGGUAAGUCAA ---------------.(((((((.((....((........))..)).)))))))--........-------.................. ( -10.20, z-score = 0.56, R) >consensus _______________ACCGUUGGGUAACUAAGGAAAACUACAGAUAGUCGGCGGAAAAAAAAUGCA_____CAGCUUCUGGUAAGUCAA ................(((((((.((.((..((....))..)).)).)))))))................................... ( -7.82 = -8.27 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:44:56 2011