| Sequence ID | dm3.chrX |
|---|---|
| Location | 14,858,309 – 14,858,384 |
| Length | 75 |
| Max. P | 0.630537 |
| Location | 14,858,309 – 14,858,384 |
|---|---|
| Length | 75 |
| Sequences | 4 |
| Columns | 76 |
| Reading direction | forward |
| Mean pairwise identity | 68.81 |
| Shannon entropy | 0.51687 |
| G+C content | 0.50785 |
| Mean single sequence MFE | -25.73 |
| Consensus MFE | -12.64 |
| Energy contribution | -17.95 |
| Covariance contribution | 5.31 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.36 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.630537 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 14858309 75 + 22422827 AGCCGGAGGAAUCGAGGGAAUUGGGCUAUCCCUUU-UGGGUAUGGUCCUCCAUUUCAGACCCUUCCUUGGGUCUUU .(((.((((((((...(((((.((((((((((...-.))).)))))))...))))).))...)))))).))).... ( -29.60, z-score = -1.14, R) >droSec1.super_32 314919 64 + 562834 ------------AACUGGAAUUGGGCUAUCCCUUUGUGGGUAUGGUCCUCCACUUCAGUCCCUUCCUUGGGUCUUU ------------...((((...((((((((((.....))).)))))))))))....((.(((......))).)).. ( -23.20, z-score = -2.44, R) >droYak2.chrX 9058667 64 + 21770863 AAUUGGGGAAAUUGGU--------GGUAUCCCUUU--GGGGAUGGUCCUCCAAUUCACUCCUUUCCUUGGGUCU-- ..(..((((((..(((--------((.(((((...--.)))))((....))...)))))..))))))..)....-- ( -22.10, z-score = -0.67, R) >droEre2.scaffold_4690 6594741 74 - 18748788 AAUCGGGGGAAUCGGUAGAGUUGGGGUAUCCCCUU--GGGUAUGGUCCCCUAUUUCGCUGCUUUCCUUGGGUCUUU ..(((((((((.(((..((((.((((.(((((...--.))...))))))).))))..))).)))))))))...... ( -28.00, z-score = -1.17, R) >consensus AAUCGGGGGAAUCGGUGGAAUUGGGCUAUCCCUUU__GGGUAUGGUCCUCCAUUUCACUCCCUUCCUUGGGUCUUU ..(((((((((..((((((((.((((((((((.....))).)))))))...))))))))..)))))))))...... (-12.64 = -17.95 + 5.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:44:55 2011