| Sequence ID | dm3.chrX |
|---|---|
| Location | 14,857,376 – 14,857,429 |
| Length | 53 |
| Max. P | 0.594558 |
| Location | 14,857,376 – 14,857,429 |
|---|---|
| Length | 53 |
| Sequences | 6 |
| Columns | 58 |
| Reading direction | reverse |
| Mean pairwise identity | 73.34 |
| Shannon entropy | 0.48973 |
| G+C content | 0.46371 |
| Mean single sequence MFE | -12.23 |
| Consensus MFE | -7.47 |
| Energy contribution | -7.83 |
| Covariance contribution | 0.37 |
| Combinations/Pair | 1.50 |
| Mean z-score | -0.98 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.594558 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 14857376 53 - 22422827 UUGGG----CAAAUCCGCCAAAAUUCGAC-UGCAGCGGAUUCCUUUUGAAUCCGAACA ...((----(......)))..........-.....(((((((.....))))))).... ( -13.50, z-score = -1.35, R) >droAna3.scaffold_13335 2515334 54 - 3335858 UUGAGAACUCGACUCUUUUCGAACUCGAUGUGUUUGGAAAUCCUUUGGGGAAAG---- .......(((((...(((((((((.......)))))))))....))))).....---- ( -10.50, z-score = 0.34, R) >droEre2.scaffold_4690 6593919 52 + 18748788 UUGGA----UAAAUCCGCCGAAAUGCGAC-UGCACUGGAUUCC-UUGGAAUCUGAACA ..(((----....))).......(((...-.)))..((((((.-...))))))..... ( -10.00, z-score = -1.04, R) >droYak2.chrX 9057877 52 - 21770863 AUGGG----CAAAUCCACAAAAAUUCGAC-UGCAGCGGAUUCC-UUGGAAUCCGAACA .((((----....))))............-.....(((((((.-...))))))).... ( -12.80, z-score = -1.46, R) >droSec1.super_32 314116 52 - 562834 UUGGG----CAAAUCCGCUAAAAUUCGAC-UGCAGCGGAUUCC-UUGGAAUCCGAACA ...((----(......)))..........-.....(((((((.-...))))))).... ( -13.30, z-score = -1.21, R) >droSim1.chrX_random 3899506 52 - 5698898 AUGGG----CAAAUCCGCUAAAAUUCGAC-UGCAGCGGAUUCC-UUGGAAUCCGAACA ...((----(......)))..........-.....(((((((.-...))))))).... ( -13.30, z-score = -1.16, R) >consensus UUGGG____CAAAUCCGCUAAAAUUCGAC_UGCAGCGGAUUCC_UUGGAAUCCGAACA ..(((........)))...................(((((((.....))))))).... ( -7.47 = -7.83 + 0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:44:54 2011