| Sequence ID | dm3.chrX |
|---|---|
| Location | 14,855,939 – 14,855,992 |
| Length | 53 |
| Max. P | 0.854305 |
| Location | 14,855,939 – 14,855,992 |
|---|---|
| Length | 53 |
| Sequences | 6 |
| Columns | 67 |
| Reading direction | reverse |
| Mean pairwise identity | 64.51 |
| Shannon entropy | 0.58448 |
| G+C content | 0.46835 |
| Mean single sequence MFE | -11.97 |
| Consensus MFE | -5.75 |
| Energy contribution | -6.58 |
| Covariance contribution | 0.83 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.39 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.93 |
| SVM RNA-class probability | 0.854305 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 14855939 53 - 22422827 UGAAGUUGCCGAAGUAACUUCUUCGUGCUGCCACCUUACACUGAAAGUUAAAU-------------- .((((((((....))))))))((((((...........))).)))........-------------- ( -9.70, z-score = -1.36, R) >droSim1.chrX_random 3897524 53 - 5698898 UGAAGUUGCCGAAGUAACUUCUUCGUGCUGCCACCUUACACUGAAAGUUAAAU-------------- .((((((((....))))))))((((((...........))).)))........-------------- ( -9.70, z-score = -1.36, R) >droYak2.chrX 9056392 53 - 21770863 UGAAGUUGCCGAAGUAACUUCUUCGUGCUGCCACCUUACACUGAAACUUAAAU-------------- .((((((((....))))))))((((((...........))).)))........-------------- ( -9.70, z-score = -1.98, R) >droEre2.scaffold_4690 6592445 53 + 18748788 UGAAGUUGCCGAAGUAACUUCUUCGUGCUGCCACCUUGCACUGCAAGUUAAGU-------------- .((((((((....))))))))...((((.........))))............-------------- ( -13.40, z-score = -1.34, R) >droWil1.scaffold_180702 4086734 61 - 4511350 CCAAGUUGCG--AGCUAACUCUAAAUGCC-ACGCC---CACCUGAAGCCCCAUGGUAAGGCUAAAAA ....((.(((--((....))).....)).-))(((---.(((((......)).)))..)))...... ( -9.50, z-score = 0.49, R) >droMoj3.scaffold_6473 15088711 53 + 16943266 UGAAGUUGCGAAAGCGUCAGCUAGACGCUGACGCGAUGUGCUGCCAGCCCCAU-------------- ....((.(((...((((((((.....))))))))....))).)).........-------------- ( -19.80, z-score = -2.78, R) >consensus UGAAGUUGCCGAAGUAACUUCUUCGUGCUGCCACCUUACACUGAAAGUUAAAU______________ .((((((((....)))))))).............................................. ( -5.75 = -6.58 + 0.83)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:44:53 2011