| Sequence ID | dm3.chrX |
|---|---|
| Location | 14,852,563 – 14,852,650 |
| Length | 87 |
| Max. P | 0.786262 |
| Location | 14,852,563 – 14,852,650 |
|---|---|
| Length | 87 |
| Sequences | 4 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 78.17 |
| Shannon entropy | 0.34155 |
| G+C content | 0.50594 |
| Mean single sequence MFE | -22.73 |
| Consensus MFE | -13.77 |
| Energy contribution | -15.33 |
| Covariance contribution | 1.56 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.68 |
| SVM RNA-class probability | 0.786262 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 14852563 87 + 22422827 GAUGCUGCUGCACUUCCCC-UGCGCACCCUGCUCUU------CAACU--------AACUGCAUUAUCGCUUAUCUACACUGAGCGGAAAUGCGGUAAUUCAU ((.(((((.(((.......-))))))....))...)------)....--------.((((((((.(((((((.......))))))).))))))))....... ( -23.40, z-score = -3.13, R) >droEre2.scaffold_4690 6588987 101 - 18748788 GAUGGUGCUGCAUUACAGC-CACCCACCUCGCCCCUGGCCCACUGCUAUUCUGCUAACUGCAUUAUCGCUUAUCUACACUGAGCGGAAAGGCGCUCAUUCAU ((((((((.(((..(.(((-......((........))......))).)..))).....))))))))............((((((......))))))..... ( -24.30, z-score = -0.31, R) >droSec1.super_32 307840 95 + 562834 GAUGGUGCUGCACUUCCCC-UGCGCACCCUGCUCCC------CUACUCUUCUCAUAACUGCAUUAUCGCUUAUCAACACUGAGCGGAAAUACGGUCAUUCAU ...(((((.(((.......-))))))))........------..............((((.(((.(((((((.......))))))).))).))))....... ( -21.10, z-score = -2.04, R) >droSim1.chrX_random 3893904 96 + 5698898 GUUGGUGCUGCACUUGCCUGCACCUACCCUGCUCCC------CUACUCUUCUCAUAACUGCAUUAUCGCUUAUCAACACUGAGCGGAAAUACGGUCAUUCAU ((.(((((.((....))..))))).)).........------..............((((.(((.(((((((.......))))))).))).))))....... ( -22.10, z-score = -2.39, R) >consensus GAUGGUGCUGCACUUCCCC_CACCCACCCUGCUCCC______CUACUCUUCUCAUAACUGCAUUAUCGCUUAUCAACACUGAGCGGAAAUACGGUCAUUCAU ...(((((...............)))))............................((((((((.(((((((.......))))))).))))))))....... (-13.77 = -15.33 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:44:52 2011