| Sequence ID | dm3.chrX |
|---|---|
| Location | 14,840,789 – 14,840,909 |
| Length | 120 |
| Max. P | 0.990206 |
| Location | 14,840,789 – 14,840,909 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 69.70 |
| Shannon entropy | 0.52829 |
| G+C content | 0.35534 |
| Mean single sequence MFE | -29.16 |
| Consensus MFE | -13.88 |
| Energy contribution | -13.92 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.25 |
| Mean z-score | -2.46 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.41 |
| SVM RNA-class probability | 0.990206 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 14840789 120 - 22422827 AUCUUAUCGCAAUGGAAACAUUUAUUAUUCUAUUGCUAUUUAGGUGGUAAAUGAUUUAACCCAUAUCAGUGGCAACAGUGUAUAGGGGGUAUAUUUGUUACGCCUAAUUUCACCAUAGUG ........(((((((((..........)))))))))...(((((((...((..(....((((.(((((.((....)).)).)))..))))....)..)).)))))))............. ( -31.60, z-score = -2.34, R) >droSim1.chrX 11454493 120 - 17042790 AUCUUAUCGCAUUAGGAUUUUUUAUUAUUCUGUUGCUAAUUAGGUGGUAAACGAUUUAACCCAUAUCAGUGGCAACAGUGUAUGGGGGGUAUAAUUGUACCGCCUAAUUUCACCAUUGCG ........(((.((((((........)))))).))).(((((((((((..((((((((.((((((.((.((....)).))))))))...)).)))))))))))))))))........... ( -40.00, z-score = -4.42, R) >droSec1.super_32 296362 104 - 562834 AUCUUAUCGCAUUAGGAUUUUUUAUUAUUCUGUUGCUAAUUAGGUGGUAAACGAUUUAACCCAUAUCAGUGGCAACAGUGUAUAGGGGGUAUAAUUGUACCGCC---------------- ........(((.((((((........)))))).)))......((((((..((((((..((((.(((((.((....)).)).)))..))))..))))))))))))---------------- ( -33.10, z-score = -3.81, R) >droYak2.chrX 9041049 95 - 21770863 -------------AGAGGGUUUUAUUAUUCUGUUGCUAAUUAGGUGGUAAAUGAUUUAAGCCAUAUCAGUGGCAAGAGUGUAUUGGGGGU-UAUU-----------AUUUCACCAUAGUG -------------....(((.....(((.((.((((((.....(((((...........))))).....)))))).)).)))...(..((-....-----------))..))))...... ( -19.70, z-score = -0.55, R) >droEre2.scaffold_4690 6577013 98 + 18748788 AUCUUAUCGCAUUAUAAGCUUUUAUUAUCCUGUUGCUAAUUAGGUGGUUAAUGAUUUAACCCAUAUCAGUGGU-AUGGUGUGCCUAAUUUCAGCUUAGU--------------------- ..(((((......))))).............((((..(((((((.((((((....))))))(((((((.....-.)))))))))))))).)))).....--------------------- ( -21.40, z-score = -1.16, R) >consensus AUCUUAUCGCAUUAGAAGCUUUUAUUAUUCUGUUGCUAAUUAGGUGGUAAAUGAUUUAACCCAUAUCAGUGGCAACAGUGUAUAGGGGGUAUAAUUGUA_CGCC__AUUUCACCAU_G_G .........................(((.(((((((((.....((((.............)))).....))))))))).)))...................................... (-13.88 = -13.92 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:44:50 2011