Locus 14685

Sequence ID dm3.chrX
Location 14,822,263 – 14,822,379
Length 116
Max. P 0.582442
window20219

overview

Window 9

Location 14,822,263 – 14,822,379
Length 116
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 91.57
Shannon entropy 0.11479
G+C content 0.55660
Mean single sequence MFE -40.87
Consensus MFE -33.39
Energy contribution -33.17
Covariance contribution -0.22
Combinations/Pair 1.04
Mean z-score -1.81
Structure conservation index 0.82
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.18
SVM RNA-class probability 0.582442
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 14822263 116 - 22422827
AAUAAGCCAUCUGAUCAGGAUCACCAGGCAAA-GGAGGUGUCACAGC---AUCAGGGUCACCACGGCCAAGCAGUUGCUCCACAUCAGGGUCAACAAUCGGAAACGGAUGGCCAAAUCCA
.....(((...((((....))))...)))...-((((((((....))---))).((....))..(((((....((((..((......))..))))..(((....))).)))))...))). ( -37.70, z-score =  -2.62, R)
>droSec1.super_32 287425 117 - 562834
AAUAAACCAUCUGAUCAGGGUCACCAGGCAAAGGGCGGUGCCGCAGC---AUGAGGGUCAGCACGGCCAAGCAGUUGCUCCACAUCAGGGCCAACAAUCGGAAACGGAUGGCCAAAUCCA
..........(((((...((.((((.(.(....).)))))))(((((---.((..((((.....))))...))))))).....)))))(((((....(((....))).)))))....... ( -39.50, z-score =  -1.23, R)
>droSim1.chrX 11445204 119 - 17042790
AAUACACCAUCUGAUCAGGGUGACCAGGCAAA-GGCGGUGCCGCAGCCUGGUGAGGGUCACCACGGCCAAGCAGUUGCUCCACAUCAGGGCCAACAAUCGGAAACGGAUGGCCAAAUCCA
....((((..........))))(((((((...-.(((....))).)))))))..((....))..(((((....((((..((......))..))))..(((....))).)))))....... ( -45.40, z-score =  -1.57, R)
>consensus
AAUAAACCAUCUGAUCAGGGUCACCAGGCAAA_GGCGGUGCCGCAGC___AUGAGGGUCACCACGGCCAAGCAGUUGCUCCACAUCAGGGCCAACAAUCGGAAACGGAUGGCCAAAUCCA
...........(((((.((....)).((((........)))).............)))))....(((((....((((..((......))..))))..(((....))).)))))....... (-33.39 = -33.17 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:44:49 2011