| Sequence ID | dm3.chrX |
|---|---|
| Location | 14,792,194 – 14,792,301 |
| Length | 107 |
| Max. P | 0.991947 |
| Location | 14,792,194 – 14,792,301 |
|---|---|
| Length | 107 |
| Sequences | 5 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 92.78 |
| Shannon entropy | 0.12954 |
| G+C content | 0.35216 |
| Mean single sequence MFE | -33.84 |
| Consensus MFE | -27.14 |
| Energy contribution | -28.58 |
| Covariance contribution | 1.44 |
| Combinations/Pair | 1.03 |
| Mean z-score | -3.38 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.51 |
| SVM RNA-class probability | 0.991947 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 14792194 107 - 22422827 CAAUAUCCGUUCGAUAUCAGGUGUGUAAAGUAAUGUAAUGACAAUUACUUGGCAAAAAUCGUGUUGUGGUUUGUCAAUUGGCAAAUA--C----------ACACUGAUCGAAAUAAAAA .........((((((....(((((((.(((((((((....)).))))))).((((........)))).(((((((....))))))))--)----------))))).))))))....... ( -26.90, z-score = -2.57, R) >droSim1.chrX 11423252 117 - 17042790 CAAUAUCCGUUCGAUAUCAGGUGUGUAAUGUAAUGUAAUGACAAUUACUUGGCAAAAAUCGUGUUGUGGUUUGUCAAUUGGCAAAUA--CACACAAGCACACACUGAUCGAAAUAAAAA .........(((((..((((((((((..(((...(((((....)))))...)))......((((.(((.((((((....))))))))--)))))..)))))).)))))))))....... ( -35.20, z-score = -3.78, R) >droSec1.super_32 232619 117 - 562834 CAAUAUCCGUUUGAUAUCAGGUGUGUAAUGUAAUGUAAUGACAAUUACUUGGCAAAAAUCGUGUUGUGGUUUGUCAAUUGGCAAAUA--CACACAAGCACACACUGAUCGAAAUAAAAA .........(((((..((((((((((..(((...(((((....)))))...)))......((((.(((.((((((....))))))))--)))))..)))))).)))))))))....... ( -33.10, z-score = -2.96, R) >droYak2.chrX 9004020 119 - 21770863 GAAUAUCCGUUCGAUAUCAGGUGUGUAAUGUAAUGUAAUGACAAUUACUUGGCAAAAAUCGUGUUGUGGUUUGUCAAUUGGCAAAUACACACACAAACACACACUGAUCGAAAUAAGGA .....(((.(((((..((((((((((..(((...(((((....)))))...)))......((((.((((((((((....))))))).)))))))..)))))).)))))))))....))) ( -40.70, z-score = -4.87, R) >droEre2.scaffold_4690 6540660 116 + 18748788 GAAUAUCCGUUCGAUAUCAGGUGUGUAAUGUAAUGUAAUGACAAUUACUUGGCAAAAAUCGUGUUGUGG-UUGUCAAUUGGCAAAUA--CACACAACCACACACUGAUCGAAAUAAGAC .........((((((....(((((((..(((...(((((....)))))...)))......(.((((((.-(((((....)))))...--..)))))))))))))).))))))....... ( -33.30, z-score = -2.71, R) >consensus CAAUAUCCGUUCGAUAUCAGGUGUGUAAUGUAAUGUAAUGACAAUUACUUGGCAAAAAUCGUGUUGUGGUUUGUCAAUUGGCAAAUA__CACACAAGCACACACUGAUCGAAAUAAAAA .........((((((....(((((((..(((...(((((....)))))...)))......((((....(((((((....)))))))....))))....))))))).))))))....... (-27.14 = -28.58 + 1.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:44:44 2011