| Sequence ID | dm3.chrX |
|---|---|
| Location | 14,792,043 – 14,792,154 |
| Length | 111 |
| Max. P | 0.578856 |
| Location | 14,792,043 – 14,792,154 |
|---|---|
| Length | 111 |
| Sequences | 5 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 90.90 |
| Shannon entropy | 0.16489 |
| G+C content | 0.38327 |
| Mean single sequence MFE | -17.00 |
| Consensus MFE | -15.38 |
| Energy contribution | -16.18 |
| Covariance contribution | 0.80 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.20 |
| Structure conservation index | 0.90 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.578856 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 14792043 111 - 22422827 ACUAAAUGCCACAAAUUUCACUUUGAUCUUCACUUUUGUAUUCAACUCUUCGGCUUCUUCAAUGCCAAAAACUGGUCAAUUGAUUGUGGUUCUUCUGCCAGCUGUCUUUUC .......(((((((...(((..((((((...((....))............(((.........))).......)))))).))))))))))..................... ( -18.70, z-score = -1.51, R) >droSim1.chrX 11423104 111 - 17042790 ACUAAAUGCCACAAAUUUCACUUUGAUCUUCACUUUUGUAUUCAACUCUUCGGCUUCUUCAAUGCCAAAAACUGGUCAAUUGAUUGUGGUUCUUCUGCCAGCUGUCUUUCC .......(((((((...(((..((((((...((....))............(((.........))).......)))))).))))))))))..................... ( -18.70, z-score = -1.48, R) >droSec1.super_32 232486 96 - 562834 ACUAAAUGCCACAAAUUUCACUUUGAUCUUCACUUUUGUAUUCAACUCUUCGGCUUCUUCAAUGCCAAAAACUGGUCAAUUGAUUGUGGUUCUUCU--------------- .......(((((((...(((..((((((...((....))............(((.........))).......)))))).))))))))))......--------------- ( -18.70, z-score = -3.18, R) >droYak2.chrX 9003875 111 - 21770863 ACUAAAUGCCACAAAUUUCACUUUGAUCUUCACUUUUUUACCCAACUCUUCGGCUUCUUCAAUGCCAAAAACUGGUCAAUUGAUUGUGGUUCUUCUGCCAGCUGUCGUUUC .......(((((((...(((..((((((.........((....))......(((.........))).......)))))).))))))))))..................... ( -15.40, z-score = -0.20, R) >droEre2.scaffold_4690 6540527 110 + 18748788 -CUAAAUGCCACUAAUUUCACUUUGAUCUUCGCUUUUUUAUUCAACUCGUCGGCUUCUUCAAUGCCAAAAACUGGUCAAUUGUUUGUGGUUCUUCUGCCAGCUGUCUUUCC -...............................................(.((((.....((((((((.....))))..))))....((((......)))))))).)..... ( -13.50, z-score = 0.38, R) >consensus ACUAAAUGCCACAAAUUUCACUUUGAUCUUCACUUUUGUAUUCAACUCUUCGGCUUCUUCAAUGCCAAAAACUGGUCAAUUGAUUGUGGUUCUUCUGCCAGCUGUCUUUCC .......(((((((...(((..((((((.......(((....)))......(((.........))).......)))))).))))))))))..................... (-15.38 = -16.18 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:44:43 2011