| Sequence ID | dm3.chrX |
|---|---|
| Location | 14,786,869 – 14,786,977 |
| Length | 108 |
| Max. P | 0.923253 |
| Location | 14,786,869 – 14,786,977 |
|---|---|
| Length | 108 |
| Sequences | 5 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 85.05 |
| Shannon entropy | 0.26469 |
| G+C content | 0.45564 |
| Mean single sequence MFE | -31.56 |
| Consensus MFE | -23.54 |
| Energy contribution | -24.42 |
| Covariance contribution | 0.88 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.16 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.30 |
| SVM RNA-class probability | 0.923253 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 14786869 108 + 22422827 CUUGUUUACGCUGUAGAACCAUUGUUGGUUUUAGGCGGCGCCUACUGUGGCGCUGGCUGCGAAUUUGAAUACUUUGAAA-UGACUUGCAGCGAUAGUUGCACAUGAAUG-- ...((((((((..((((((((....))))))))(.(((((((......))))))).).)))..................-.....((((((....))))))..))))).-- ( -36.00, z-score = -2.74, R) >droSim1.chrX_random 3882808 108 + 5698898 CUUGUUUACGCUGUAGAACCAUUGUUGGUUUUAGGCGGCGCCUACUGUGGUGCUGGCUUCGAAUUUGAAUACUUUGAAA-UGACUGGCAGCGAUAGUUGCACAUGAAUG-- ........(((((((((((((....))))))).(.(((((((......))))))).)((((((.........)))))).-......)))))).................-- ( -31.40, z-score = -1.53, R) >droSec1.super_32 227418 110 + 562834 CUUGUUUACGCUGUAGAACCAUUGUUGGUUUUAGGCGGCGCCUACUGUGGCGCCGGCUGCGAAUUUGAAUACUUUGAAA-UGACUUGCAGCGAUAGUUGCACAUGAAUGGG ((..(((((((..((((((((....))))))))(.(((((((......))))))).).)))..................-.....((((((....))))))..))))..)) ( -41.00, z-score = -3.64, R) >droYak2.chrX 8998593 107 + 21770863 CUUGUUUACCCUGUAGAACCAUUGUUGGUUUUAGGCGGCGCCUACUGUG--GCUGACUGCGAAUUUGAAUACUUUCAAAGUGUCUUGCAACGAUAGUUGCACAUGAAUG-- .............((((((((....)))))))).((((((((......)--)).).))))((.((((((....))))))...)).((((((....))))))........-- ( -30.00, z-score = -1.81, R) >droEre2.scaffold_4690 6535377 84 - 18748788 CUUGUUUACCCUGUAGAACCAUUAUUGGUUUUAGGCGGCGCCUACUGUG--CUUGGCUGCGAAGUUGAAUACUUUGAAA-UGACUUG------------------------ .............((((((((....))))))))((((((((.....)))--))..))).((((((.....))))))...-.......------------------------ ( -19.40, z-score = -1.09, R) >consensus CUUGUUUACGCUGUAGAACCAUUGUUGGUUUUAGGCGGCGCCUACUGUGG_GCUGGCUGCGAAUUUGAAUACUUUGAAA_UGACUUGCAGCGAUAGUUGCACAUGAAUG__ ..((((((.....((((((((....))))))))(.(((((((......))))))).)........))))))...............(((((....)))))........... (-23.54 = -24.42 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:44:42 2011