| Sequence ID | dm3.chr2L |
|---|---|
| Location | 11,406,352 – 11,406,418 |
| Length | 66 |
| Max. P | 0.980767 |
| Location | 11,406,352 – 11,406,418 |
|---|---|
| Length | 66 |
| Sequences | 7 |
| Columns | 66 |
| Reading direction | forward |
| Mean pairwise identity | 70.64 |
| Shannon entropy | 0.61201 |
| G+C content | 0.47403 |
| Mean single sequence MFE | -18.17 |
| Consensus MFE | -10.32 |
| Energy contribution | -10.94 |
| Covariance contribution | 0.62 |
| Combinations/Pair | 1.56 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.06 |
| SVM RNA-class probability | 0.980767 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 11406352 66 + 23011544 UGUAAUCGAUGUGCUUGCAAGUCGCAAAGUAAUCGAUUGCUGUUGAAAGGACACUGCCUCAAGGCG .(((((((((.(((((((.....)).))))))))))))))((((.....))))..(((....))). ( -21.10, z-score = -2.31, R) >droAna3.scaffold_12916 12114448 54 - 16180835 ---AAUUGG---GGUUUGGAGACCCAA-GUAAUCGAUCACCGAUCAAAGG-----GUUUUAAGGAU ---......---......(((((((..-.(.((((.....)))).)..))-----)))))...... ( -10.80, z-score = 0.19, R) >droEre2.scaffold_4929 12608087 65 - 26641161 UGUAAUCGAUUUGGUGGCAAGUCGCAG-GUAAUCGAUUGCUGUUGAAAGAACAACGCCUCGAGGCG .((((((((((..((((....))))..-..)))))))))).((((......))))(((....))). ( -22.70, z-score = -2.72, R) >droYak2.chr2L 7805199 64 + 22324452 UGUAAUCGAUGUGGUUGCAAGUCGCAG-GUGAUCGAUUACUGUUGAAAGGACAAUGCCUCAAG-CG .(((((((((.((.((((.....))))-.))))))))))).(((...(((......)))..))-). ( -18.10, z-score = -1.51, R) >droSec1.super_3 6801211 65 + 7220098 UGUAAUCGAUGUGGUUGCAAGUCGCAG-GUAAUCGAUUACUGUUGAAAGGACAUUGCCUCAAGGCG .(((((((((.((.((((.....))))-.)))))))))))((((.....))))..(((....))). ( -20.50, z-score = -2.51, R) >droSim1.chr2L 11214722 65 + 22036055 UGUAAUCGAUGUGGUUGCAAUUCGCAG-GUAAUCGAUUACUGUUGAAAGGACAAUGCCUCAAGGCG .(((((((((.((.((((.....))))-.)))))))))))((((.....))))..(((....))). ( -20.70, z-score = -2.83, R) >droVir3.scaffold_12970 426004 65 - 11907090 GGUAAACAAAGCGCUUCAAAACGGCUGCCUAGUUGAGUGCU-UAGAGGGGGGACGGCGGCAAUGAG .......................((((((.(((.....)))-......(....)))))))...... ( -13.30, z-score = 1.32, R) >consensus UGUAAUCGAUGUGGUUGCAAGUCGCAG_GUAAUCGAUUACUGUUGAAAGGACAAUGCCUCAAGGCG .(((((((((....((((.....))))....)))))))))...............(((....))). (-10.32 = -10.94 + 0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:32:31 2011