| Sequence ID | dm3.chrX |
|---|---|
| Location | 14,777,993 – 14,778,083 |
| Length | 90 |
| Max. P | 0.951068 |
| Location | 14,777,993 – 14,778,083 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 90 |
| Reading direction | forward |
| Mean pairwise identity | 96.44 |
| Shannon entropy | 0.06168 |
| G+C content | 0.52222 |
| Mean single sequence MFE | -32.90 |
| Consensus MFE | -29.94 |
| Energy contribution | -29.66 |
| Covariance contribution | -0.28 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.32 |
| Structure conservation index | 0.91 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.57 |
| SVM RNA-class probability | 0.951068 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 14777993 90 + 22422827 UAAUUUCGCCAACGGAGCGGUGCAGCUUGUUGUUCCGCUGCGAAUGCAAAUAUAUUUUUCCAUGUUGCCGGCUUCCGACAACCAGGCCAA .......(((..((.(((((.((((....)))).))))).)).....................((((.(((...))).))))..)))... ( -26.90, z-score = -1.04, R) >droEre2.scaffold_4690 6526903 90 - 18748788 UAUUUUCGCCAGCGGAGCGGCGCAGCUCGUUGUUCCGCUGCGAAUGCAAAUAUAUUUUUGCAUGUUGCCGGCUUCCGACAACCAGGCCAA .....((((.((((((((((((.....))))))))))))))))(((((((......)))))))((((.(((...))).))))........ ( -37.70, z-score = -3.26, R) >droYak2.chrX 8989730 90 + 21770863 UAUUUUCGCCAGCGGAGCGGCGCAGCUUGUUGUUCCGCUGCGAAUGCAAAUAUAUUUUUGCAUGUUGCCGGCUUCCGACAACCAGGCCAA .....((((.((((((((((((.....))))))))))))))))(((((((......)))))))((((.(((...))).))))........ ( -36.40, z-score = -2.88, R) >droSec1.super_32 218742 90 + 562834 CAUUUUCGCCAGCGGAGCGACGCAGCUUGUUGUUCCGCUGCGAAUGCAAAUAUAUUUUUCCAUGUUGCCGGCUUCCGACAACCAGGCCAA ....(((((.((((((((((((.....)))))))))))))))))...............((..((((.(((...))).))))..)).... ( -32.00, z-score = -2.68, R) >droSim1.chrX 11405651 90 + 17042790 CAUUUUCGCCAGCGGAGCGGCGCAGCUUGUUGUUCCGCUGCGAAUGCAAAUAUAUUUUUCCAUGUUGCCGGCUUCCGACAACCAGGCCAA ....(((((.((((((((((((.....)))))))))))))))))...............((..((((.(((...))).))))..)).... ( -31.50, z-score = -1.74, R) >consensus UAUUUUCGCCAGCGGAGCGGCGCAGCUUGUUGUUCCGCUGCGAAUGCAAAUAUAUUUUUCCAUGUUGCCGGCUUCCGACAACCAGGCCAA ....(((((.((((((((((((.....))))))))))))))))).((((.(((........))))))).(((((.........))))).. (-29.94 = -29.66 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:44:40 2011