| Sequence ID | dm3.chrX |
|---|---|
| Location | 14,757,440 – 14,757,533 |
| Length | 93 |
| Max. P | 0.668385 |
| Location | 14,757,440 – 14,757,533 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 93 |
| Reading direction | reverse |
| Mean pairwise identity | 84.59 |
| Shannon entropy | 0.26747 |
| G+C content | 0.33924 |
| Mean single sequence MFE | -17.74 |
| Consensus MFE | -13.20 |
| Energy contribution | -12.64 |
| Covariance contribution | -0.56 |
| Combinations/Pair | 1.39 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.668385 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 14757440 93 - 22422827 CCAGAAGUUCUUAGCAGCUAAAACUGGUUGCUUCUUCCUUGUGAAGCCAUUUAAAAAUGCGACUCAUAAAAGGUUUAUAUCUGAGAAUCAUAC ......((((((((((((((....))))))).....((((((((..(((((....)))).)..)))))..)))........)))))))..... ( -19.70, z-score = -1.30, R) >droEre2.scaffold_4690 6507157 91 + 18748788 CCAGAAGUUCUUAGCAAUUAAAACUGGUUGCUUAUUCCUUUUGAAACCAUUUAAAAGCACUAUUCAUAAAAGGUUUAUGCCUGAGAAUCAA-- ......((((((((((((((....)))))))).....((((((((....)))))))).............((((....))))))))))...-- ( -16.50, z-score = -1.05, R) >droYak2.chrX 8970015 84 - 21770863 CCAGAAGUUCUUAGCAAUUAAAACUGAUUGCUGCUUCCUUGUGAAACCAUUUAAAAGUACUACUCAUAAAAGGUUUACACCUGA--------- ...(((((....((((((((....)))))))))))))(..((((((((.((((..((.....))..)))).))))).)))..).--------- ( -20.30, z-score = -3.37, R) >droSec1.super_32 198891 93 - 562834 CCAGAAGUUCAAAGCAGCUAAAAAUGGUCGCUUCUUCCUUGUGAAACCAUUUAAAAAUGCUACUCAUAAAAGGUUUAUAUCUGAGAAUCAUAU ...((..(((..((((.....((((((((((.........))))..)))))).....)))).........((((....)))))))..)).... ( -15.80, z-score = -1.05, R) >droSim1.chrX 16089382 93 - 17042790 CCAGAAGUUCAAAGCAGCUAAAAAUGGUCGCUUCUUCCUUGUGAAACCAUUUAAAAAUGCUACUCAUAAAAGAUUUAUAUCUGAGAAUCAUAC ...((..(((..((((.....((((((((((.........))))..)))))).....)))).........((((....)))))))..)).... ( -16.40, z-score = -1.62, R) >consensus CCAGAAGUUCUUAGCAGCUAAAACUGGUUGCUUCUUCCUUGUGAAACCAUUUAAAAAUGCUACUCAUAAAAGGUUUAUAUCUGAGAAUCAUA_ .((.(((....(((((((((....)))))))))....))).))...........................((((....))))........... (-13.20 = -12.64 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:44:39 2011