| Sequence ID | dm3.chrX |
|---|---|
| Location | 14,750,934 – 14,751,001 |
| Length | 67 |
| Max. P | 0.736443 |
| Location | 14,750,934 – 14,751,001 |
|---|---|
| Length | 67 |
| Sequences | 4 |
| Columns | 70 |
| Reading direction | forward |
| Mean pairwise identity | 83.45 |
| Shannon entropy | 0.25956 |
| G+C content | 0.27767 |
| Mean single sequence MFE | -12.85 |
| Consensus MFE | -10.36 |
| Energy contribution | -10.93 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.81 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.736443 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 14750934 67 + 22422827 UAUGUAAAUGGAAAAUUUUACGAAAUAUUGCGGUUGCCAAGUGUAAUGGCAGUGUUUAAAUGAUAUA--- ..((((((........))))))(((((((((.(((((.....))))).)))))))))..........--- ( -17.10, z-score = -3.22, R) >droSim1.chrX 16082217 70 + 17042790 AAUGUAAAUGGAAAAUUUUACAAAAUAUUGCGGUUGCCAAGUGUAAUGACAGUGUUUAAAUGAUGUAAAA ..((((((........))))))((((((((..(((((.....)))))..))))))))............. ( -12.10, z-score = -1.27, R) >droSec1.super_32 192328 70 + 562834 AAUGUAAAUGGAAAAUUUUACAAAAUAUUGCGGUUGCCAAUUGUAAUGACAGUGUUUAAAUGAUGUAAAA ..((((((........))))))((((((((..(((((.....)))))..))))))))............. ( -12.10, z-score = -1.20, R) >droEre2.scaffold_4690 6500604 67 - 18748788 UAUGUAAAUGGAAAAUUUCACGAAGUAUUGUGGUUGCCAAGUGUAAUAAAGUGAUUUAACUUUUACA--- ..((((((.(..(((((.(((((....)))))(((((.....))))).....)))))..).))))))--- ( -10.10, z-score = -0.39, R) >consensus AAUGUAAAUGGAAAAUUUUACAAAAUAUUGCGGUUGCCAAGUGUAAUGACAGUGUUUAAAUGAUAUA___ ..((((((........))))))(((((((((.(((((.....))))).)))))))))............. (-10.36 = -10.93 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:44:38 2011