Locus 14675

Sequence ID dm3.chrX
Location 14,747,764 – 14,747,872
Length 108
Max. P 0.954622
window20204 window20205

overview

Window 4

Location 14,747,764 – 14,747,862
Length 98
Sequences 7
Columns 108
Reading direction reverse
Mean pairwise identity 58.26
Shannon entropy 0.81828
G+C content 0.42399
Mean single sequence MFE -20.36
Consensus MFE -7.52
Energy contribution -6.34
Covariance contribution -1.17
Combinations/Pair 2.15
Mean z-score -1.44
Structure conservation index 0.37
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.61
SVM RNA-class probability 0.954622
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 14747764 98 - 22422827
-------GACAUUUAGCCAGAGACAUCGGCGACAGGUUCAUCGAAGAACCCCGCCCGAAUUCUUCUGCU---AAAAAGAAGAAUCACGCAGAAUCACGAUGACACUAU
-------................((((((((...(((((......))))).)))).((.(((((((...---....)))))))))............))))....... ( -25.00, z-score =  -2.97, R)
>droAna3.scaffold_13335 619854 107 - 3335858
GCCAUUCGAGAAUCAAAACAUCAAUUUAGAUUCAAAAAUCCCCAUAAAUUAAUCCAAGAUAUGAUGGGU-UUAACCGAAAAGAUCACGAUGAGUUGCCAAAAAAAAAU
((.(((((.(((((.(((......))).))))).......(((((..(((.......)))...))))).-...................))))).))........... ( -14.10, z-score =  -0.54, R)
>droEre2.scaffold_4690 6497488 98 + 18748788
-------GACAUUUAACCAGAGACGGUGGGUACAGGUUCUUCGAAGAACCCCGCCCGAAUUCCUCUGCU---AAAAAGAAGAAUCACGCAGAAUCACGAUGUCACUAU
-------((((((....(((((....(((((...((((((....))))))..))))).....)))))..---........((.((.....)).))..))))))..... ( -27.00, z-score =  -2.43, R)
>droYak2.chrX 8960372 94 - 21770863
-------GACAUUUAACUAGAUACAACGGAGACAGGUUCUUCGACGAACCCCGCCCGAAUUCUUUUGCU---AAAAAAAUAAA----AAAGAGUCAAGAUGGCACUAU
-------..(((((............(((.(...(((((......)))))...)))).((((((((...---..........)----)))))))..)))))....... ( -17.22, z-score =  -1.38, R)
>droSec1.super_32 189163 101 - 562834
-------GACAUUUAGCCAGAGACGUCGGCGACAGGUUCUUCGAAGAACCCCGCCCGAAUUCUUCUGCCAAAAAAAAAAAGAAUCACGCAGAAUCAUGAUGACACUAU
-------................((((((((...((((((....)))))).)))).......((((((...................))))))....))))....... ( -21.81, z-score =  -1.55, R)
>droSim1.chrX 16079112 98 - 17042790
-------GACAUUUAGCCAGAGACGUCGGCGACAGGUUCUUCGAAGAACCCCGCCCGAAUUCUUCUGCC---AAAAAAAAGAAUCACGCAGAAUCACGAUGACACUAU
-------................((((((((...((((((....)))))).)))).......((((((.---...............))))))....))))....... ( -22.29, z-score =  -1.65, R)
>droMoj3.scaffold_6473 14953414 81 + 16943266
-----GUCUUGAUCACCCAGACAGAUUUAUGUGUUGCUGUUCGGUGG-----GUUGACAUAUUAUUGGU--AAUAAAAAUGAAUUGAACGCGU---------------
-----((((.(.....).)))).(((((((.((((((((....(((.-----.....))).....))))--))))...)))))))........--------------- ( -15.10, z-score =   0.46, R)
>consensus
_______GACAUUUAACCAGAGACAUCGGCGACAGGUUCUUCGAAGAACCCCGCCCGAAUUCUUCUGCU___AAAAAAAAGAAUCACGCAGAAUCACGAUGACACUAU
.................(((((....(((.....(((((......)))))....))).....)))))......................................... ( -7.52 =  -6.34 +  -1.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 5

Location 14,747,774 – 14,747,872
Length 98
Sequences 7
Columns 105
Reading direction reverse
Mean pairwise identity 60.54
Shannon entropy 0.78731
G+C content 0.43037
Mean single sequence MFE -23.46
Consensus MFE -6.73
Energy contribution -7.41
Covariance contribution 0.68
Combinations/Pair 1.67
Mean z-score -1.66
Structure conservation index 0.29
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.87
SVM RNA-class probability 0.841061
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 14747774 98 - 22422827
GAUCUGGUUUGACAU--UUAGCCAGAGAC--AUCGGCGACAGGUUCAUCGAAGAACCCCGCCCGAAUUCUUCUGCUA---AAAAGAAGAAUCACGCAGAAUCACG
..(((((((......--..)))))))((.--.((((((...(((((......))))).)))).((.(((((((....---...))))))))).....)).))... ( -29.60, z-score =  -3.17, R)
>droAna3.scaffold_13335 619864 105 - 3335858
GAUCUGUUGCCAUUCGAGAAUCAAAACAUCAAUUUAGAUUCAAAAAUCCCCAUAAAUUAAUCCAAGAUAUGAUGGGUUUAACCGAAAAGAUCACGAUGAGUUGCC
(((((.......((((.(((((.(((......))).))))).......(((((..(((.......)))...)))))......)))).)))))............. ( -15.80, z-score =   0.09, R)
>droEre2.scaffold_4690 6497498 98 + 18748788
GAUUUGGUUUGACAU--UUAACCAGAGAC--GGUGGGUACAGGUUCUUCGAAGAACCCCGCCCGAAUUCCUCUGCUA---AAAAGAAGAAUCACGCAGAAUCACG
(((((.((.(((...--.....(((((..--..(((((...((((((....))))))..))))).....)))))((.---...)).....))).)).)))))... ( -25.60, z-score =  -1.40, R)
>droYak2.chrX 8960382 94 - 21770863
GAUCUGGUUUGACAU--UUAACUAGAUAC--AACGGAGACAGGUUCUUCGACGAACCCCGCCCGAAUUCUUUUGCU----AAAAAAAUAAAAA---AGAGUCAAG
.((((((((......--..))))))))..--..(((.(...(((((......)))))...)))).((((((((...----..........)))---))))).... ( -22.02, z-score =  -2.37, R)
>droSec1.super_32 189173 101 - 562834
GAUCUGGUUUGACAU--UUAGCCAGAGAC--GUCGGCGACAGGUUCUUCGAAGAACCCCGCCCGAAUUCUUCUGCCAAAAAAAAAAAGAAUCACGCAGAAUCAUG
..(((((((......--..)))))))((.--.((((((...((((((....)))))).)).))))..))((((((...................))))))..... ( -28.21, z-score =  -2.50, R)
>droSim1.chrX 16079122 98 - 17042790
GAUCUGGUUUGACAU--UUAGCCAGAGAC--GUCGGCGACAGGUUCUUCGAAGAACCCCGCCCGAAUUCUUCUGCCA---AAAAAAAGAAUCACGCAGAAUCACG
..(((((((......--..)))))))((.--.((((((...((((((....)))))).)).))))..))((((((..---..............))))))..... ( -28.39, z-score =  -2.45, R)
>droMoj3.scaffold_6473 14953423 80 + 16943266
--CUUGUCUUGUCUUGAUCACCCAGACAG--AUUUAUGUGUUGCUGUUCGGUGG-----GUUGACAUAUUAUUGGUAA--UAAAAAUGAAU--------------
--......((((((.(.....).))))))--((((((.((((((((....(((.-----.....))).....))))))--))...))))))-------------- ( -14.60, z-score =   0.20, R)
>consensus
GAUCUGGUUUGACAU__UUAGCCAGAGAC__AUCGGCGACAGGUUCUUCGAAGAACCCCGCCCGAAUUCUUCUGCUA___AAAAAAAGAAUCACGCAGAAUCACG
..(((((((..........))))))).......(((.....(((((......)))))....)))......................................... ( -6.73 =  -7.41 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:44:37 2011