| Sequence ID | dm3.chrX |
|---|---|
| Location | 14,736,466 – 14,736,521 |
| Length | 55 |
| Max. P | 0.815251 |
| Location | 14,736,466 – 14,736,521 |
|---|---|
| Length | 55 |
| Sequences | 5 |
| Columns | 55 |
| Reading direction | reverse |
| Mean pairwise identity | 73.82 |
| Shannon entropy | 0.47583 |
| G+C content | 0.42864 |
| Mean single sequence MFE | -12.94 |
| Consensus MFE | -5.80 |
| Energy contribution | -8.44 |
| Covariance contribution | 2.64 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.99 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.78 |
| SVM RNA-class probability | 0.815251 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 14736466 55 - 22422827 GUUGGCAAAAAGGCAGCAAAAGUGCAGAGUAAACUCGUCUAUUGGUCGCCAGUUA .(((((.((.((((.(((....))).(((....))))))).))....)))))... ( -14.30, z-score = -1.67, R) >droSim1.chrX 11383217 55 - 17042790 GUUGGCAAAAAGGCAGCAAAAGUGCAGAGUAAACUCGUCUAUUGGUCGGCAUUUA ((((((.((.((((.(((....))).(((....))))))).)).))))))..... ( -16.50, z-score = -3.03, R) >droSec1.super_32 178044 55 - 562834 GUUGGCAAAAAGGCAGCAAAAGUGCAGAGUAAACUCGUCUAUUGGUCGGCAUUUA ((((((.((.((((.(((....))).(((....))))))).)).))))))..... ( -16.50, z-score = -3.03, R) >droEre2.scaffold_4690 6486340 54 + 18748788 GUUGGC-AAAAGGCAGCGAAAGUGCAGAGUAAACUCGUCUUUUAGUCCGCAGUUA ((.(((-(((((((.((....))...(((....)))))))))).))).))..... ( -16.90, z-score = -2.64, R) >triCas2.chrUn_9 616113 51 + 915065 UUUACCAAAGACGUAG--AUAUUAACCCCUUGACCC--UGACUAAACGAAAAUUA (((((.......))))--).................--................. ( -0.50, z-score = 0.43, R) >consensus GUUGGCAAAAAGGCAGCAAAAGUGCAGAGUAAACUCGUCUAUUGGUCGGCAGUUA ((((((.((.((((.(((....))).(((....))))))).)).))))))..... ( -5.80 = -8.44 + 2.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:44:36 2011