| Sequence ID | dm3.chrX |
|---|---|
| Location | 14,720,024 – 14,720,134 |
| Length | 110 |
| Max. P | 0.547979 |
| Location | 14,720,024 – 14,720,134 |
|---|---|
| Length | 110 |
| Sequences | 5 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 86.51 |
| Shannon entropy | 0.23913 |
| G+C content | 0.53337 |
| Mean single sequence MFE | -31.42 |
| Consensus MFE | -25.64 |
| Energy contribution | -25.92 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.32 |
| Structure conservation index | 0.82 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.547979 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chrX 14720024 110 - 22422827 GUUCGCUACGAACCGCCGACGGACGCUUUAGUUUGGCUGCAACGCUUUGCUGAGAACAGACCAAAUCCGAAGCGAGCGGAGCCGAAGAGAAACCGAACAAACCAAACAAA (((((((.....(((....))).((((((.(((((((((.....(((....)))..))).))))))..)))))))))((...(.....)...))))))............ ( -27.70, z-score = -0.78, R) >droSim1.chrX 11366035 108 - 17042790 GUUCGCUUCGAUCCGCCGACGGACGCUUUAGUUUGGCUGCAACGCUUUGCUGAGAACAGACCAAAU-CGAAGCGAGCGGAACUGAAGAGAAUCCGAGCAAACCAAACAA- (((((.((((.((((....))))).(((((((((.(((((..((.(((((((....)))..)))).-))..)).))).))))))))).)))..)))))...........- ( -34.40, z-score = -1.92, R) >droSec1.super_32 161496 108 - 562834 GUUCGCUUCGAUCCGCCGACGGACGCUUUAGUUUGGCUGCAACGCUUUGCUGAGAACAGACCAAAU-CGAAGCGAGCGGAACUGAAGAGAAUCCGAGCAAACCAAACAA- (((((.((((.((((....))))).(((((((((.(((((..((.(((((((....)))..)))).-))..)).))).))))))))).)))..)))))...........- ( -34.40, z-score = -1.92, R) >droYak2.chrX 8934721 106 - 21770863 GUUCGCUUCGACCCGCCGACGGACGCUUUAGUUUGGCUGCAACACCUUGCUGAGAACAGACCGAUU-CGAAGCGAACU---CGAAGCUGAAAGCGAGCAAACCAAACAAA (((((((((((.(((....))).((.(((.((((..(.((((....)))).).))))))).))..)-)))))))))).---....(((.......)))............ ( -30.00, z-score = -1.33, R) >droEre2.scaffold_4690 6468846 101 + 18748788 GUUCGCUUCGACCCGCCGACGGACGCUUUAGUUUGGCUGCAACGCUUUGCUGAGAACAGACCGAAC-GGAAGCGAGCC-----GAGC--AAACCGAAC-GGCCAAACAAA (((((..(((......))))))))(((((.(((((((((.....(((....)))..))).))))))-.)))))(.(((-----(..(--.....)..)-))))....... ( -30.60, z-score = -0.66, R) >consensus GUUCGCUUCGACCCGCCGACGGACGCUUUAGUUUGGCUGCAACGCUUUGCUGAGAACAGACCAAAU_CGAAGCGAGCGGA_CUGAAGAGAAACCGAGCAAACCAAACAAA ((((((((((..(((....)))....((((((..(((......)))..)))))).............))))))))))................................. (-25.64 = -25.92 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:44:35 2011