| Sequence ID | dm3.chrX |
|---|---|
| Location | 14,699,603 – 14,699,708 |
| Length | 105 |
| Max. P | 0.956969 |
| Location | 14,699,603 – 14,699,708 |
|---|---|
| Length | 105 |
| Sequences | 3 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 83.71 |
| Shannon entropy | 0.21864 |
| G+C content | 0.44287 |
| Mean single sequence MFE | -29.73 |
| Consensus MFE | -21.92 |
| Energy contribution | -22.70 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.60 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.64 |
| SVM RNA-class probability | 0.956969 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 14699603 105 - 22422827 UCAAAAUCAAGAUGGUAUUUCGGAUGCAGCAAUAAAGACCGUACUCGUACAAUAAUAUCAUUCACAUAAAUACCAGGUUGCUUUGCUGAACUCCUCGGUGUUGAG ((((.(((..((.......))(((..((((((....(((((((....))).........(((......)))....))))...))))))...)))..))).)))). ( -20.20, z-score = -0.43, R) >droSec1.super_32 146775 97 - 562834 UCAAAAUCAAGAUGGUAGUUCGGCUGCAGCAAUAAAGACCGAAGAUGAGUG--CACAGUACUC------AUACCAGGUUGUUUUGCCGAACUCCUCGGUGUUGAG ((((.(((..((.((.((((((((...((((......(((....(((((((--(...))))))------))....)))))))..))))))))))))))).)))). ( -33.30, z-score = -3.42, R) >droSim1.chrX 11350340 97 - 17042790 UCAAAAUCAAGAUGGUAGUUCGGCUGCAGCAAUAAAGACCGAAGAUGAGUG--CACAGUACUC------AUACCAGGUUGCUUUGCCGAACUCCUCGGUGUUGAG ((((.(((..((.((.((((((((...((((......(((....(((((((--(...))))))------))....)))))))..))))))))))))))).)))). ( -35.70, z-score = -3.93, R) >consensus UCAAAAUCAAGAUGGUAGUUCGGCUGCAGCAAUAAAGACCGAAGAUGAGUG__CACAGUACUC______AUACCAGGUUGCUUUGCCGAACUCCUCGGUGUUGAG ((((.(((..((.((.((((((((...((((((.............(((((.......))))).............))))))..))))))))))))))).)))). (-21.92 = -22.70 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:44:32 2011