| Sequence ID | dm3.chrX |
|---|---|
| Location | 14,699,310 – 14,699,426 |
| Length | 116 |
| Max. P | 0.637720 |
| Location | 14,699,310 – 14,699,426 |
|---|---|
| Length | 116 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 76.58 |
| Shannon entropy | 0.40602 |
| G+C content | 0.42315 |
| Mean single sequence MFE | -30.82 |
| Consensus MFE | -19.16 |
| Energy contribution | -18.68 |
| Covariance contribution | -0.48 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.637720 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 14699310 116 + 22422827 CCCAAAGGCCAUAAAAACGGCGGUGGCCAUUUGUCGGGCUUUAGUAUUUUUAUUAGCAAGUACGCGAAAUUCGAUUUCCAUCAUGGG--AAAUUCGAUAUAUGUA--UGUAUAUGGUGAC ....((((((....(((.(((....))).)))....))))))..........(((.((.(((((((....(((((((((......))--))).))))....))).--.)))).)).))). ( -27.90, z-score = -0.45, R) >droEre2.scaffold_4690 6454224 95 - 18748788 CCCAAAGGCCAUAAAAC--UUGGUGGCCAUUUGUUGGGCUUUAGUGCUUUUAUUAGCAAGUGCGCGAAAUUCGAUUUCGAUGGCGACUAAGGGGCAC----------------------- .......(((......(--(((((.((((((.((((((.(((.(..(((........)))..)..))).))))))...)))))).)))))).)))..----------------------- ( -30.60, z-score = -1.69, R) >droYak2.chrX 8920083 108 + 21770863 CCCAAUGGCCAUAAAAC--UCGGUGGCCAUUUGUUGGGCUUUAGUACUUUUAUUAGCAAGUGCGCGAAAUUCGAUUUCCAUUGUGGGUGGUAUUCGAUAUAUAUGGGGAC---------- ((((.(((((((.....--...)))))))(((((.(.(((((((((....)))))..)))).))))))..((((...((((.....))))...))))......))))...---------- ( -30.80, z-score = -1.12, R) >droSec1.super_32 146469 116 + 562834 ACCAAAGGCCAUAAAAC--GCGGUGGCCAUUUGUCGGGCUUUAGUAUUUUUAUUAUCAAGUACGCGAAAUUCGAUUUCCAUCAUGGG--GAAUUCGAUAUAUGUACUUGUAUAUGGCGAC .......((((((....--((...((((........))))...))...........((((((((......((((.((((.......)--))).))))....))))))))..))))))... ( -32.40, z-score = -1.98, R) >droSim1.chrX 11350034 116 + 17042790 ACCAAAGGCCAUAAAAC--GCGGUGGCCAUUUGUCGGGCUUUAGUAUUUUUAUUAUCAAGUACGCGAAAUUCGAUUUCCAUCAUGGG--GAAUUCGAUAUAUGUACUUGUAUAUGGCGAU .......((((((....--((...((((........))))...))...........((((((((......((((.((((.......)--))).))))....))))))))..))))))... ( -32.40, z-score = -1.85, R) >consensus CCCAAAGGCCAUAAAAC__GCGGUGGCCAUUUGUCGGGCUUUAGUAUUUUUAUUAGCAAGUACGCGAAAUUCGAUUUCCAUCAUGGG__GAAUUCGAUAUAUGUA__UGUAUAUGG_GA_ .(((..((((((..........))))))....((((((.(((.((((((........))))))..))).))))))........))).................................. (-19.16 = -18.68 + -0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:44:31 2011