| Sequence ID | dm3.chr2L |
|---|---|
| Location | 11,403,129 – 11,403,215 |
| Length | 86 |
| Max. P | 0.726514 |
| Location | 11,403,129 – 11,403,215 |
|---|---|
| Length | 86 |
| Sequences | 7 |
| Columns | 89 |
| Reading direction | reverse |
| Mean pairwise identity | 67.48 |
| Shannon entropy | 0.61003 |
| G+C content | 0.48875 |
| Mean single sequence MFE | -25.16 |
| Consensus MFE | -10.64 |
| Energy contribution | -10.79 |
| Covariance contribution | 0.15 |
| Combinations/Pair | 1.56 |
| Mean z-score | -1.37 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.52 |
| SVM RNA-class probability | 0.726514 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 11403129 86 - 23011544 --UAUGAUUAACUUCAUACCACUGUGCACGGGCAUAAGGAAAGCUCCACUAUUGGGUGGUGCU-UUCGAUUUUUUCUGAGGGUGAAACU --..........(((((.((..(((((....)))))..((((((.(((((....))))).)))-)))............)))))))... ( -26.00, z-score = -2.59, R) >droPer1.super_1 8301474 86 - 10282868 UACUUUUUGCACCUCGAACCACUGUGCCUUGGCAGCCGUAAGUCACUCCAAUUGGGUGAUGCCACUCCCGUUGGCCCUGGGGCACA--- .......................((((((..(.........(((((.((....)))))))((((.......)))).)..)))))).--- ( -25.90, z-score = 0.01, R) >dp4.chr4_group3 6853467 79 - 11692001 -------UGCACCUCGAACCACUGUGCCUUGGCAGUCGUAAGUCAAUCCAAAUGGGUGCUGCCACUCCCGUUGGCCCUGGGGCACA--- -------................((((((..(..(.(....).)...((((.((((.(......).))))))))..)..)))))).--- ( -24.00, z-score = 0.66, R) >droSim1.chr2L 11211539 81 - 22036055 -------UAAGCUUUAUACCACUGUGCACGGGCACAAGGAAAGCUCCACUAUUGGGUGGUGCU-UUCGAUUUUUUCUGAGGGUGGAACU -------...........(((((((((....))))...((((((.(((((....))))).)))-))).............))))).... ( -28.90, z-score = -3.16, R) >droSec1.super_3 6797956 81 - 7220098 -------UUAACUUUAUACCACUGUGCACGGGCACUAGGAACGCUCCACUAUUGGGUGGUGCU-UUCUAUUUUUUCUGAGGGUAGAACU -------.........((((.((((((....))))((((((.((.(((((....))))).)))-))))).........))))))..... ( -23.70, z-score = -2.33, R) >droYak2.chr2L 7801714 86 - 22324452 --UAUAAUUAAUUUCAUACCACUGUGCAAGUGAACUAGGACAGCUCCACUAUUGGGUGGUGCU-UUCGAUUUCUGCUGAGGGUGAAACU --.........((((((.((.(...(((((....))..((.(((.(((((....))))).)))-.))......))).).)))))))).. ( -21.90, z-score = -1.09, R) >droEre2.scaffold_4929 12604696 85 + 26641161 --UAUGAUUGGUUUUGAACCACUGUGCACG-GCACUAGCGGAGCUCCACUAUUGGGUGGUGCC-UUCGAUUUUUUCUGAGGGUGGAACU --.......((((((..((((((((((...-))))(((.((....)).)))...))))))(((-(((((.....)).)))))))))))) ( -25.70, z-score = -1.12, R) >consensus ____U__UUAACUUCAUACCACUGUGCACGGGCACUAGGAAAGCUCCACUAUUGGGUGGUGCU_UUCGAUUUUUUCUGAGGGUGGAACU ...........(((((.......((((....))))......(((.((((......)))).))).............)))))........ (-10.64 = -10.79 + 0.15)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:32:30 2011