Locus 14666

Sequence ID	dm3.chrX
Location	14,656,142 – 14,656,197
Length	55
Max. P	0.655337

overview

Window 0

Location	14,656,142 – 14,656,197
Length	55
Sequences	6
Columns	55
Reading direction	reverse
Mean pairwise identity	68.09
Shannon entropy	0.58037
G+C content	0.34617
Mean single sequence MFE	-7.50
Consensus MFE	-5.17
Energy contribution	-3.53
Covariance contribution	-1.64
Combinations/Pair	1.86
Mean z-score	-0.36
Structure conservation index	0.69
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	0.35
SVM RNA-class probability	0.655337
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chrX 14656142 55 - 22422827
UUUAAUUAAAACGCUUGAAAUUGGGGAAUUAACUGUCUGUCUACAUAGGAUGGGA
.((((((....(.(........).).))))))...(((((((.....))))))). (  -6.20, z-score =   0.16, R)
>droSim1.chrX 11314452 55 - 17042790
UUUAAUUAAAGCGCUUGAAAUUGCGGAAUUAACUGUCUGUCUACAUCGGAUGGAA
.((((((....(((........))).))))))(((((((.......))))))).. ( -10.90, z-score =  -1.48, R)
>droSec1.super_32 108443 55 - 562834
UUUAAUUAAAGCGCUUGAAAUUGUGGAAUUAACUGUCUGUCUACAUAGGAUGGAA
.((((((....(((........))).))))))...(((((((.....))))))). (  -8.20, z-score =  -0.65, R)
>droYak2.chrX 8882584 50 - 21770863
UUCAACUAAAGCGCUUGAAAUGGGGUUUUUA-----CUGUCUACAUAAGCUGGCA
..........(((((((...((((((....)-----))..)))..)))))..)). (  -5.50, z-score =   1.31, R)
>dp4.chrXL_group1e 7905596 52 + 12523060
UUAAAUUAAAGCCAUUGUCAAUGAG-AUUUA--CAUUUUGUUGCACAGACAGAGC
..............(((((((..((-((...--.))))..))).))))....... (  -7.10, z-score =  -0.63, R)
>droPer1.super_17 370498 51 + 1930428
UUAAAUU-AAGCCAUUGUCAAUGAG-AUUUA--CAUUUUGUUGCACAGACAGAGA
.......-......(((((((..((-((...--.))))..))).))))....... (  -7.10, z-score =  -0.88, R)
>consensus
UUUAAUUAAAGCGCUUGAAAUUGAGGAAUUA__UGUCUGUCUACAUAGGAUGGGA
...................................(((((((.....))))))). ( -5.17 =  -3.53 +  -1.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:44:25 2011