| Sequence ID | dm3.chrX |
|---|---|
| Location | 14,652,237 – 14,652,331 |
| Length | 94 |
| Max. P | 0.595046 |
| Location | 14,652,237 – 14,652,331 |
|---|---|
| Length | 94 |
| Sequences | 14 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 67.60 |
| Shannon entropy | 0.68868 |
| G+C content | 0.60628 |
| Mean single sequence MFE | -38.94 |
| Consensus MFE | -9.91 |
| Energy contribution | -9.95 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.71 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.25 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.595046 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 14652237 94 + 22422827 CCUUGGCCUCGCUGGCCAGGACCAACGCUUCGAUAG-CAUUGAUAUUGCCAUUGGGAUCCUUCACGG------CGGCACUUUCA------GCAUCCGCGGAGGCCAG- .(((((((.....)))))))..........((((.(-((.......))).))))((..(((((.(((------..((.......------))..))).)))))))..- ( -31.70, z-score = -0.65, R) >droSim1.chrX 11310623 94 + 17042790 CCUUGGCCUCGCUGGCCAGGACCAAGGCUUCGAUAG-CAUUGAUAUUGCCAUUGGGAUCCUUCACGG------CCGCACUUUCA------GCAUCCGAAGAGGCCAG- ...(((((((((.(((((((((((((((.(((((..-.)))))....))).))))..))))....))------))))...(((.------......)))))))))).- ( -36.90, z-score = -2.49, R) >droSec1.super_32 104552 94 + 562834 CCUUGGCCUCGCUGGCCAGGACCAAGGCUUCGAUAG-CAUUGAUAUUGCCAUUGGGAUCCUUCACGG------CCGCACUUUCA------GCAUCCGAAGAGGCCAG- ...(((((((((.(((((((((((((((.(((((..-.)))))....))).))))..))))....))------))))...(((.------......)))))))))).- ( -36.90, z-score = -2.49, R) >droYak2.chrX 8878784 94 + 21770863 CCUUGGCCUCGCUGGCCAGGACCAAGGCUUCGAUGG-CAUUGAUAUUGCCAUUGGGAUCCUUCACGG------AGGCACUCUCC------GCAUCCGAGGUGGCCAG- .(((((((.....))))))).....(((((((((((-((.......)))))))))...((((..(((------((.....))))------).....)))).))))..- ( -39.20, z-score = -1.76, R) >droEre2.scaffold_4690 6414656 94 - 18748788 CCUUGGCCUCGCUGGCCAGGACCAAGGCUUCGAUAG-CAUUGAUGUUGCCAUUGGGAUCCUUCACGG------AGGCACUUUCC------GCAUCCGAGGAGGCCGG- .(((((((.....))))))).(((((((.(((((..-.)))))....))).))))...(((((.(((------(.((.......------)).)))).)))))....- ( -37.40, z-score = -1.29, R) >droAna3.scaffold_12948 69707 94 - 692136 CUUUGGCCUCACUGGCCAGGGCCAAGGCUUCGAUGG-CGUUGAUGUUGCCGUUCGGGUCCUUCACGG------AAGCCCGCUCC------GCGUCCGAGCGGGCUAG- ((((((((.....))))))))((((((((..(((((-((.......)))))))..)).))))...))------.(((((((((.------......)))))))))..- ( -45.30, z-score = -2.20, R) >dp4.chrXL_group1e 7902035 94 - 12523060 CCUUGGCCUCACUGGCCAAGGCCAGAGCCUCGAUGG-CGUUGAUGUUGCCAUUGGGAUCCUUGAUGG------AGGCGCGUUCC------GCAUCGGUACGCGCCAG- ((((((((.....)))))))).......((((((((-((.......)))))))))).(((.....))------)(((((((.((------(...))).)))))))..- ( -50.00, z-score = -4.35, R) >droPer1.super_17 367048 94 - 1930428 CCUUGGCCUCACUGGCCAAGGCCAGAGCCUCGAUGG-CGUUGAUGUUGCCAUUGGGAUCCUUGAUGG------AGGCGCGUUCC------GCAUCGGUACGCGCCAG- ((((((((.....)))))))).......((((((((-((.......)))))))))).(((.....))------)(((((((.((------(...))).)))))))..- ( -50.00, z-score = -4.35, R) >droWil1.scaffold_181150 811486 104 - 4952429 CCUUUGCCUCACUGGCCAAGGCUAAAGCCUCAAUGG-CAUUGAUAUUGCCAUUGGGAUCCUUGACAGCAUUGCAGGCAUUUUCCUCA---GCAUCUGGACGGGCCAAU ....(((....(((..(((((......((.((((((-((.......))))))))))..))))).)))....)))(((....(((...---......)))...)))... ( -33.10, z-score = -0.36, R) >droGri2.scaffold_15203 3454668 94 + 11997470 CCUUGGCCUCGCUGGCCAGUACGAGUGCCUCAAUGG-CAUUGAUGUUGCCAUUGGUUUCCCGGAACG------AGGCAUGCUCC------GUAUCCGUGCGCAUUCC- ..((((((.....))))))...((((((.(((((((-((.......))))))))).....(((((((------..(....)..)------)).))))...)))))).- ( -37.80, z-score = -2.54, R) >droVir3.scaffold_12970 11468492 94 + 11907090 CCUUGGCCUCGCUGGCCAGGGCCAGCGCCUCGACAG-CAUUGAUGUUGCCAUUGGGCUCUCGUAUGG------AGCCGUGCUCC------GUGUCCGAGCGCGACUC- ((((((((.....))))))))...((((.((((.((-(.(..(((....)))..)))).)).(((((------(((...)))))------)))...)))))).....- ( -41.70, z-score = -1.41, R) >droMoj3.scaffold_6473 7137837 94 - 16943266 CCUUGGCCUCGCUGGCCAGCGCCAGCGCCUCGAUCG-CAUUGAUAUUGCCAUUGGCUUCCUUCACGG------AGCCGUGCUCC------GUGUCCGUG-GCAUUGCC ....(((...((((((....))))))(((.((..((-(..(((....(((...))).....))).((------(((...)))))------)))..)).)-))...))) ( -38.00, z-score = -1.86, R) >anoGam1.chr2R 30871474 95 + 62725911 CAUCGUCAUCGAUCGCUGGAGCCUUCGCUUCGUCGAUCAGCCCGGUUCCCGGUGGCUUUUCGGCCGG-----GGUGCAUUCUUC-------CAUCCGUCGACCUCGG- ...((...(((((.(.(((((....(((((((((((..(((((((...)))..))))..)))).)))-----)))).....)))-------)).).)))))...)).- ( -32.70, z-score = -0.27, R) >triCas2.ChLG6 11703934 93 - 13544221 UCCUGAUACCGUU---CAGGACCGGACUUCCG------AUUUGUGCCUCUUUGGGGGCCGUCGACGA----GAUGACAUCCUGCAGAAUGGAGUCCACAGGCCCGG-- ((((((......)---)))))..(((((.(((------.((((((((((....)))))((((.....----)))).......))))).))))))))..........-- ( -34.40, z-score = -1.07, R) >consensus CCUUGGCCUCGCUGGCCAGGACCAAGGCUUCGAUGG_CAUUGAUGUUGCCAUUGGGAUCCUUCACGG______AGGCACUCUCC______GCAUCCGAGGGCGCCAG_ ..((((((.....))))))..((((.((.(((((....)))))....))..))))..................................................... ( -9.91 = -9.95 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:44:22 2011