| Sequence ID | dm3.chrX |
|---|---|
| Location | 14,643,444 – 14,643,501 |
| Length | 57 |
| Max. P | 0.989593 |
| Location | 14,643,444 – 14,643,501 |
|---|---|
| Length | 57 |
| Sequences | 6 |
| Columns | 57 |
| Reading direction | reverse |
| Mean pairwise identity | 81.40 |
| Shannon entropy | 0.35855 |
| G+C content | 0.49594 |
| Mean single sequence MFE | -19.93 |
| Consensus MFE | -13.54 |
| Energy contribution | -14.63 |
| Covariance contribution | 1.08 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.62 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.38 |
| SVM RNA-class probability | 0.989593 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 14643444 57 - 22422827 CUGCAUCAAUGUUGCGGCAGCUAAAAUGUUGCCAAGCAGCAUCAUCAAAUGUUGCCC ..(((.......)))((((((......))))))..(((((((......))))))).. ( -20.50, z-score = -3.04, R) >droSim1.chrX 11302047 57 - 17042790 CUGCAUCAAUGUUGCGGCAGCAAUAAUGUUGCCAAGCAGCAUCACCAAAUGUUGCCC ..(((.......)))(((((((....)))))))..(((((((......))))))).. ( -20.70, z-score = -2.80, R) >droSec1.super_32 96189 57 - 562834 CCGCAUCAAUGUUGCGGCAGCAAAAAUGUUGCCAAGCAGCAUCACCAAAUGUUGCCC ..(((.......)))(((((((....)))))))..(((((((......))))))).. ( -21.00, z-score = -3.51, R) >droYak2.chrX 8870138 57 - 21770863 CUGCAUCAAUGUUGCGGCAGCACAAAUGUUGCCAAGCAGCAUCAUCAAAUGUUGCUC ..(((.......)))(((((((....))))))).((((((((......)))))))). ( -21.50, z-score = -3.01, R) >droEre2.scaffold_4690 6405026 57 + 18748788 CUGCAUCAAUGUUGCGGCAGCACAAAUGUUGCCAAGCAGCAUCACCAAAUGUUGCUC ..(((.......)))(((((((....))))))).((((((((......)))))))). ( -21.50, z-score = -2.85, R) >droVir3.scaffold_12970 11459292 54 - 11907090 GUACACACUUGUAGCGC--AUUGAAGCGAUGCCAA-CAGCAGCGUCACACAGUGCAC .((((....))))..((--((((..(.(((((...-.....))))).).)))))).. ( -14.40, z-score = -0.49, R) >consensus CUGCAUCAAUGUUGCGGCAGCAAAAAUGUUGCCAAGCAGCAUCACCAAAUGUUGCCC ..(((.(((((((((((((((......))))))..))))))).......)).))).. (-13.54 = -14.63 + 1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:44:22 2011