| Sequence ID | dm3.chrX |
|---|---|
| Location | 14,633,657 – 14,633,750 |
| Length | 93 |
| Max. P | 0.718444 |
| Location | 14,633,657 – 14,633,750 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 82.55 |
| Shannon entropy | 0.28868 |
| G+C content | 0.35973 |
| Mean single sequence MFE | -23.28 |
| Consensus MFE | -16.42 |
| Energy contribution | -16.26 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.718444 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 14633657 93 + 22422827 GCUCUCGAAUAAUUAGUGAAUAAUAAUGAAUGGCA--GUGCACAAAUGUGAACUUGCA------------------ACUCAAUGAACUUGAGGGCAGUAAAAAAUA----CAUAGAA ((((((((...((((.....))))..(((...(((--((.(((....))).)).))).------------------..)))......)))))))).(((.....))----)...... ( -20.00, z-score = -2.03, R) >droEre2.scaffold_4690 6394763 97 - 18748788 GCUCUCGAAUAAUUAGUGAAUAAUAAUGAUUGGCA--GUGCACAAAUGUGAACUUGCA------------------ACCCAAUGAACUUGAGGGCAAUCAAAAGUAUGUACAUAGAA ((((((((.((((((...........))))))(((--((.(((....))).)).))).------------------...........))))))))...................... ( -19.20, z-score = -0.71, R) >droYak2.chrX 8860164 108 + 21770863 GCUCUCGAAUAAUUAGUGAAUAAUAAUGAGUGGCAAUGUGUACGAAUGUGAACUUGCAACUUUAACUG-----AAAACUCAAUGAACUUGAGGGCAGUCAAACUGG----CAUAGAA ((((((((...((((((..........((((.((((.((.(((....))).)))))).))))......-----...))).)))....)))))))).(((.....))----)...... ( -23.91, z-score = -1.51, R) >droSec1.super_32 86506 111 + 562834 GCUCUCGAAUAAUUAGUGAAUAAUAAUGAAUGGCA--GUGCACAAAUGUGAACUUGCAGCUUCAACUGCACUGCAAACUCAAUGAACUUGAGGGCAGUAAAAAAUA----CAUAGAA ((((((((...((((.....))))..(((...(((--(((((......((((........))))..))))))))....)))......)))))))).(((.....))----)...... ( -26.70, z-score = -1.90, R) >droSim1.chrX 11292316 113 + 17042790 GCUCUCGAAUAAUUAGUGAAUAAUAAUGAAUGGCA--GUGCACAAAUGUGAACUUGCAACUUCAACUGCACUGCAAACUCAAUGAACUUGAGGGCAGUAAAAAAAAA--ACAUAGAA ((((((((...((((.....))))..(((...(((--(((((......((((........))))..))))))))....)))......))))))))............--........ ( -26.60, z-score = -2.66, R) >consensus GCUCUCGAAUAAUUAGUGAAUAAUAAUGAAUGGCA__GUGCACAAAUGUGAACUUGCA_CUU_AACUG______AAACUCAAUGAACUUGAGGGCAGUAAAAAAUA____CAUAGAA ((((((((...((((.....))))........(((.....(((....)))....)))..............................))))))))...................... (-16.42 = -16.26 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:44:21 2011