| Sequence ID | dm3.chrX |
|---|---|
| Location | 14,627,047 – 14,627,154 |
| Length | 107 |
| Max. P | 0.959187 |
| Location | 14,627,047 – 14,627,154 |
|---|---|
| Length | 107 |
| Sequences | 4 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 97.98 |
| Shannon entropy | 0.03179 |
| G+C content | 0.53146 |
| Mean single sequence MFE | -39.33 |
| Consensus MFE | -37.58 |
| Energy contribution | -38.08 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.14 |
| Structure conservation index | 0.96 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.66 |
| SVM RNA-class probability | 0.959187 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 14627047 107 - 22422827 ACAAGCUGUCUAGGCCUUGAAAACGAGGCA-GCAUUGGUUGCCCAAAGGGCAAUCGUAACUGAAACAGCAGCCAUCAUGUCGAGACUUUGGCCACUGGGCAAACCAGC ....(((((.(((((((((....)))))).-.....((((((((...))))))))....)))..))))).((((....((....))..))))..((((.....)))). ( -39.30, z-score = -2.36, R) >droEre2.scaffold_4690 6388424 107 + 18748788 ACAAGCUGUCUAGGCCUUGAAAACGAGGCA-GCAUUGGUUGCCCAAAGGGCAAUCGUAGCUGAAACAGCAGCCAUCAUGUCGAGACUUGGGCCACUGGGCAAACCAGC .......(((((((.(((((....(((((.-.....((((((((...))))))))...((((...)))).))).))...))))).)))))))..((((.....)))). ( -40.70, z-score = -2.08, R) >droYak2.chrX 8853616 108 - 21770863 ACAAGCUGUCUAGGCCUUGAAAACGAGGCACCCAUUGGUUGCCCAAAGGGCAAUCGUAACUGAAACAGCAGCCAUCAUGUCGAGACUUGGGCCACUGGGCAAACCAGC ....(((((.(((((((((....)))))).......((((((((...))))))))....)))..))))).(((.....((....))...)))..((((.....)))). ( -38.00, z-score = -1.77, R) >droSec1.super_32 80073 107 - 562834 ACAAGCUGUCUAGGCCUUGAAAACGAGGCA-GCAUUGGUUGCCCAAAGGGCAAUCGUAACUGAAACAGCAGCCAUCAUGUCGAGACUUUGGCCACUGGGCAAACCAGC ....(((((.(((((((((....)))))).-.....((((((((...))))))))....)))..))))).((((....((....))..))))..((((.....)))). ( -39.30, z-score = -2.36, R) >consensus ACAAGCUGUCUAGGCCUUGAAAACGAGGCA_GCAUUGGUUGCCCAAAGGGCAAUCGUAACUGAAACAGCAGCCAUCAUGUCGAGACUUGGGCCACUGGGCAAACCAGC ....(((((.(((((((((....)))))).......((((((((...))))))))....)))..))))).((((....((....))..))))..((((.....)))). (-37.58 = -38.08 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:44:18 2011