| Sequence ID | dm3.chrX |
|---|---|
| Location | 14,609,799 – 14,609,914 |
| Length | 115 |
| Max. P | 0.802546 |
| Location | 14,609,799 – 14,609,914 |
|---|---|
| Length | 115 |
| Sequences | 5 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 92.78 |
| Shannon entropy | 0.12874 |
| G+C content | 0.44081 |
| Mean single sequence MFE | -33.72 |
| Consensus MFE | -26.87 |
| Energy contribution | -28.31 |
| Covariance contribution | 1.44 |
| Combinations/Pair | 1.03 |
| Mean z-score | -2.17 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.74 |
| SVM RNA-class probability | 0.802546 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 14609799 115 - 22422827 UUUUUAAGC---CUGUCAAGGCACUCAUAUUUCAAACUUUGUUGCAUCUUAAGAGACCGAUCCCAAUUUGAACCGGUUGGGAUCGUAAAGUAGCACUGCAACGAAUUGGCGUGAAGUU .......((---((....))))......((((((..(((((((((((((....))).(((((((((((......)))))))))))...........))))))))...))..)))))). ( -35.10, z-score = -2.89, R) >droEre2.scaffold_4690 6372188 115 + 18748788 UUUUUAAGC---CUGUCAAGGCCCCCAUAUAUCAAACUUUGUUGCAUCUUAAGCGGCCGAUCCCAAUUCGAACCGGUUGGGAUCGUAAAGUAGCACUGCAACGAAUUGGCGUGAAGUU .......((---((....)))).....(((..(((..(((((((((......((...(((((((((((......)))))))))))....)).....))))))))))))..)))..... ( -33.60, z-score = -1.83, R) >droYak2.chrX 8838093 117 - 21770863 UUUUUAAGCCUGUCA-CAAGUCGCCCAUAUUUCAAACUUUGUUGCCUCUUAAGAGACCGAUCCCAAUUCGAACCGGUUAGGAUCGUAAAGUAGCACUGCAGCGAAUUGCCGUGAAGUU ...............-............((((((.(.(((((((((((....)))..((((((.((((......)))).))))))............)))))))).)....)))))). ( -22.30, z-score = 0.21, R) >droSec1.super_32 62943 118 - 562834 UUUUUAAGCCUGCUGUCAAGGCACCCAUAUUUCAAACUUUGUUGCAUCUUAAGAGACCGAUCCCAAUUGGAACCGGUUGGGAUCGUAAAGUAGCACUGCAACGAAUUGGCGUGAAGUU .......((((.......))))......((((((..(((((((((((((....))).((((((((((((....))))))))))))...........))))))))...))..)))))). ( -38.80, z-score = -3.18, R) >droSim1.chrX 11269495 118 - 17042790 UUUUUAAGCCUGCUGUCAAGGCACCCAUAUUUCAAACUUUGUUGCAUCUUAAGAGACCGAUCCCAAUUGGAACCGGUUGGGAUCGUAAAGUAGCACUGCAACGAAUUGGCGUGAAGUU .......((((.......))))......((((((..(((((((((((((....))).((((((((((((....))))))))))))...........))))))))...))..)))))). ( -38.80, z-score = -3.18, R) >consensus UUUUUAAGCCUGCUGUCAAGGCACCCAUAUUUCAAACUUUGUUGCAUCUUAAGAGACCGAUCCCAAUUCGAACCGGUUGGGAUCGUAAAGUAGCACUGCAACGAAUUGGCGUGAAGUU .......((((.......))))......((((((.(.(((((((((...........(((((((((((......)))))))))))...........))))))))).)....)))))). (-26.87 = -28.31 + 1.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:44:14 2011