Locus 14653

Sequence ID dm3.chrX
Location 14,593,243 – 14,593,341
Length 98
Max. P 0.964216
window20174 window20175

overview

Window 4

Location 14,593,243 – 14,593,341
Length 98
Sequences 5
Columns 117
Reading direction forward
Mean pairwise identity 90.15
Shannon entropy 0.16043
G+C content 0.42401
Mean single sequence MFE -26.66
Consensus MFE -24.72
Energy contribution -24.40
Covariance contribution -0.32
Combinations/Pair 1.08
Mean z-score -2.01
Structure conservation index 0.93
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.73
SVM RNA-class probability 0.964216
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 14593243 98 + 22422827
-----------UGAUGCUGCCAAUGAUCAUCAACGC-GAUGACGCCAACACGCAAUUUGGCAAACAAAUUACGCCAAAAAUGUGCAUUGGGAAACAGAAAACAGCAAAUU-------
-----------...(((((.(((((.(((((.....-)))))........((((.((((((...........))))))..)))))))))(....)......)))))....------- ( -25.30, z-score =  -2.21, R)
>droEre2.scaffold_4690 6358693 105 - 18748788
-----------UGAUGCUGCCAAUGAUCAUCAGCGC-GAUGACGCCAACACGCAAUUUGGCAAACAAAUUACGCCAAAAAUGUGCAUUGGGAAACAGAAAACAGCAAACAGCAAAUU
-----------...(((((.(((((.(((((.....-)))))........((((.((((((...........))))))..)))))))))(....)......)))))........... ( -25.30, z-score =  -1.16, R)
>droYak2.chrX 8822916 110 + 21770863
UGAUGCUGCCAUGCUGCUGUUGAUGAUCAUCAACGCCGAUGACGCCAACACGCAAUUUGGCAAACAAAUUACGCCAAAAAUGUGCAUUGGGAAACAGAAAACAGCAAAUU-------
...((((((.((((((((((((.((.(((((......))))))).))))).))).((((((...........)))))).....)))).)(....)......)))))....------- ( -32.10, z-score =  -2.28, R)
>droSec1.super_32 46849 98 + 562834
-----------UGAUGCUGCCAAUGAUCAUCAACGC-GAUGACGCCAACACGCAAUUUGGCAAACAAAUUACGCCAAAAAUGUGCAUUGGGAAACAGAAAACAGCAAAUU-------
-----------...(((((.(((((.(((((.....-)))))........((((.((((((...........))))))..)))))))))(....)......)))))....------- ( -25.30, z-score =  -2.21, R)
>droSim1.chrX 11253335 98 + 17042790
-----------UGAUGCUGCCAAUGAUCAUCAACGC-GAUGACGCCAACACGCAAUUUGGCAAACAAAUUACGCCAAAAAUGUGCAUUGGGAAACAGAAAACAGCAAAUU-------
-----------...(((((.(((((.(((((.....-)))))........((((.((((((...........))))))..)))))))))(....)......)))))....------- ( -25.30, z-score =  -2.21, R)
>consensus
___________UGAUGCUGCCAAUGAUCAUCAACGC_GAUGACGCCAACACGCAAUUUGGCAAACAAAUUACGCCAAAAAUGUGCAUUGGGAAACAGAAAACAGCAAAUU_______
..............(((((.(((((.(((((......)))))........((((.((((((...........))))))..)))))))))(....)......)))))........... (-24.72 = -24.40 +  -0.32)

alignment

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secondary structure

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dotplot

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Window 5

Location 14,593,243 – 14,593,341
Length 98
Sequences 5
Columns 117
Reading direction reverse
Mean pairwise identity 90.15
Shannon entropy 0.16043
G+C content 0.42401
Mean single sequence MFE -31.46
Consensus MFE -29.82
Energy contribution -29.50
Covariance contribution -0.32
Combinations/Pair 1.07
Mean z-score -1.86
Structure conservation index 0.95
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.68
SVM RNA-class probability 0.960518
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 14593243 98 - 22422827
-------AAUUUGCUGUUUUCUGUUUCCCAAUGCACAUUUUUGGCGUAAUUUGUUUGCCAAAUUGCGUGUUGGCGUCAUC-GCGUUGAUGAUCAUUGGCAGCAUCA-----------
-------....(((((((...((....(((((((.((..(((((((.........))))))).)).))))))).((((((-.....))))))))..)))))))...----------- ( -30.10, z-score =  -2.00, R)
>droEre2.scaffold_4690 6358693 105 + 18748788
AAUUUGCUGUUUGCUGUUUUCUGUUUCCCAAUGCACAUUUUUGGCGUAAUUUGUUUGCCAAAUUGCGUGUUGGCGUCAUC-GCGCUGAUGAUCAUUGGCAGCAUCA-----------
...........(((((((...((....(((((((.((..(((((((.........))))))).)).))))))).((((((-.....))))))))..)))))))...----------- ( -30.10, z-score =  -1.03, R)
>droYak2.chrX 8822916 110 - 21770863
-------AAUUUGCUGUUUUCUGUUUCCCAAUGCACAUUUUUGGCGUAAUUUGUUUGCCAAAUUGCGUGUUGGCGUCAUCGGCGUUGAUGAUCAUCAACAGCAGCAUGGCAGCAUCA
-------....(((((((..(((((..(((((((.((..(((((((.........))))))).)).))))))).((.....))((((((....)))))))))))...)))))))... ( -36.90, z-score =  -2.29, R)
>droSec1.super_32 46849 98 - 562834
-------AAUUUGCUGUUUUCUGUUUCCCAAUGCACAUUUUUGGCGUAAUUUGUUUGCCAAAUUGCGUGUUGGCGUCAUC-GCGUUGAUGAUCAUUGGCAGCAUCA-----------
-------....(((((((...((....(((((((.((..(((((((.........))))))).)).))))))).((((((-.....))))))))..)))))))...----------- ( -30.10, z-score =  -2.00, R)
>droSim1.chrX 11253335 98 - 17042790
-------AAUUUGCUGUUUUCUGUUUCCCAAUGCACAUUUUUGGCGUAAUUUGUUUGCCAAAUUGCGUGUUGGCGUCAUC-GCGUUGAUGAUCAUUGGCAGCAUCA-----------
-------....(((((((...((....(((((((.((..(((((((.........))))))).)).))))))).((((((-.....))))))))..)))))))...----------- ( -30.10, z-score =  -2.00, R)
>consensus
_______AAUUUGCUGUUUUCUGUUUCCCAAUGCACAUUUUUGGCGUAAUUUGUUUGCCAAAUUGCGUGUUGGCGUCAUC_GCGUUGAUGAUCAUUGGCAGCAUCA___________
...........(((((((.........(((((((.((..(((((((.........))))))).)).))))))).((((((......))))))....))))))).............. (-29.82 = -29.50 +  -0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:44:12 2011