| Sequence ID | dm3.chrX |
|---|---|
| Location | 14,592,692 – 14,592,742 |
| Length | 50 |
| Max. P | 0.860471 |
| Location | 14,592,692 – 14,592,742 |
|---|---|
| Length | 50 |
| Sequences | 3 |
| Columns | 50 |
| Reading direction | forward |
| Mean pairwise identity | 94.67 |
| Shannon entropy | 0.07346 |
| G+C content | 0.44000 |
| Mean single sequence MFE | -9.97 |
| Consensus MFE | -9.05 |
| Energy contribution | -9.17 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.87 |
| Structure conservation index | 0.91 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.95 |
| SVM RNA-class probability | 0.860471 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 14592692 50 + 22422827 UUAUAUUUAGCCCGAGAGUGCAUUUUCCGCACUUUGUGCUUUUCCUCGCU ........(((.(.(((((((.......)))))))).))).......... ( -10.40, z-score = -2.13, R) >droSim1.chrX 11252788 50 + 17042790 UUAAAUUUAGCCCAAGUGUGCAUUUUCCGCACUUUGUGCUUUUCCUCGCU ........(((.((((.((((.......)))))))).))).......... ( -10.00, z-score = -2.41, R) >droYak2.chrX 8822372 50 + 21770863 UUAAAUUUAGCCCGAGAGUGCAUUUUCCGCACUGUGUGCUUUUCCUCGCU ........(((..(((((..(((..........)))..)))))....))) ( -9.50, z-score = -1.08, R) >consensus UUAAAUUUAGCCCGAGAGUGCAUUUUCCGCACUUUGUGCUUUUCCUCGCU ........(((.((((.((((.......)))))))).))).......... ( -9.05 = -9.17 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:44:11 2011