| Sequence ID | dm3.chrX |
|---|---|
| Location | 14,585,674 – 14,585,781 |
| Length | 107 |
| Max. P | 0.747927 |
| Location | 14,585,674 – 14,585,781 |
|---|---|
| Length | 107 |
| Sequences | 12 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 80.73 |
| Shannon entropy | 0.42456 |
| G+C content | 0.51476 |
| Mean single sequence MFE | -32.14 |
| Consensus MFE | -24.14 |
| Energy contribution | -23.58 |
| Covariance contribution | -0.55 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.05 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.57 |
| SVM RNA-class probability | 0.747927 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 14585674 107 - 22422827 UACGAGUUCCUUGCUCGGUAGGGGCAAUAUGAUGCUGCUGGUGCCGCGCAAGAGCAUCGAGUGCCAGUGUCCAAAGAUAAAGCUAAACAAGUGAGUAUAAUUCCAUC- ...(((((...(((((((((..((((...(((((((.((.(((...))).)))))))))..))))..)).)).........(((.....)))))))).)))))....- ( -29.30, z-score = -0.40, R) >droWil1.scaffold_181150 738866 81 + 4952429 AACCAGCUCCUUGCUGGGUCGUGGCAAUAUGAUGUUGCUGGUGCCACGAAAAAGCAUCGAGUGCCAGUGUCCCAAAAUCAA--------------------------- .....((((..((((...((((((((....(......)...))))))))...))))..))))...................--------------------------- ( -25.00, z-score = -1.43, R) >droYak2.chrX 8815045 107 - 21770863 AACGAGUUCCCUGCUCGGAAGGGGCAAUAUGAUGCUGCUGGUGCCGCGCAAGAGCAUCGAGUGCCAGUGUCCAAAAAUAAAGCUAAACAAGUGAGUAUUAUGUCAAA- ..(((((.....))))).....((((...((((((((((((..(((.((....))..)).)..))))).............(((.....))).)))))))))))...- ( -29.30, z-score = -0.57, R) >droEre2.scaffold_4690 6351835 107 + 18748788 CACGAGCUCCCUGCUCGGAAGGGGCAACAUGAUGCUGCUGGUGCCGCGCAAGAGCAUCGAGUGCCAGUGUCCAAAAAUAAAGCUCAACAAGUGAGUAUUACCCAAAA- ..(((((.....)))))...((((((......))).(((((..(((.((....))..)).)..))))).........(((.(((((.....))))).))))))....- ( -34.30, z-score = -1.42, R) >droSec1.super_32 37850 107 - 562834 UACGAGUUCCUUGCUCGGAAGGGGCAAUAUGAUGCUGCUGGUGCCGCGCAAGAGCAUCGAGUGCCAGUGUCCAAAAAUAAAGCUAAACAAGUGAGUACUAUCUUAUA- ...((((.....))))(((...((((...(((((((.((.(((...))).)))))))))..))))....)))..................(((((......))))).- ( -29.60, z-score = -0.51, R) >droSim1.chrX 11243662 107 - 17042790 UACGAGUUCCUUGCUCGGAAGGGGCAAUAUGAUGCUGCUGGUGCCGCGCAAGAGCAUCGAGUGCCAGUGUCCAAAGAUAAAGCUAAACAAGUGAGUAUUAUCCCAUC- ..(((((.....)))))...(((..(((((...((((((((..(((.((....))..)).)..)))))(((....)))...........)))..)))))..)))...- ( -32.00, z-score = -1.17, R) >droMoj3.scaffold_6473 7048304 108 + 16943266 AACCAGUUCCCUGCUGGGACGUGGCAAUAUGAUGCUGCUGGUGCCGCGCAAGAGUAUCGAGUGCCAGUGCCCCAAGAUCAAGUUGAACAAGUGAGUAGCUCUCGAAUC .....((((.((.(((((.(((((((...(((((((.((.(((...))).)))))))))..))))).)).))).))....))..))))...((((.....)))).... ( -30.00, z-score = 0.11, R) >droGri2.scaffold_15203 3381145 107 - 11997470 GACCAGCUCGCUGCUGGGGCGUGGCAACAUGAUGCUGCUUGUGCCACGCAAGAGCAUCGAGUGCCAGUGCCCCAAAAUCAAGCUGAACAAGUGAGUACCGCUCAAUC- ...(((((.(.(..((((((((((((...(((((((.((((((...)))))))))))))..))))).)))))))..).).)))))......((((.....))))...- ( -48.10, z-score = -3.93, R) >droVir3.scaffold_12970 11396858 98 - 11907090 GACCAGCUCGCUGCUGGGACGUGGCAACAUGAUGCUGCUGGUGCCGCGCAAGAGCAUCGAGUGUCAGUGCCCCAAGAUCAAGCUGAACAAGUGAGUAU---------- .....(((((((..((((.((((....))))..((.(((((..(((.((....))..)).)..))))))))))).(.((.....)).).)))))))..---------- ( -33.00, z-score = -0.05, R) >droAna3.scaffold_12905 538109 97 + 569613 CACCAGUUCUCUGCUGGGCCGUGGCAACAUGAUGUUGCUGGUGCCACGCAAGAGCAUCGAAUGCCAGUGCCCCAAAAUCAAGCUGAAUAAGUAAGUA----------- ...(((((.......((((..(((((...(((((((((((....)).)))...))))))..)))))..))))........)))))............----------- ( -28.26, z-score = -0.27, R) >droPer1.super_17 292597 106 + 1930428 GACCAGCUCCCUGCUCGGUCGGGGCAAUAUGAUGCUGCUGGUGCCACGCAAGAGCAUCGAGUGCCAGUGUCCCAAAAUCAAGCUGAAUAAGUAAGUACUACUCAAU-- (((((((.....))).))))((((((...((..(((..((((((..(....).)))))))))..)).))))))........(((.....)))..............-- ( -33.40, z-score = -1.36, R) >dp4.chrXL_group1e 7826968 106 + 12523060 GACCAGCUCCCUGCUCGGUCGGGGCAAUAUGAUGCUGCUGGUGCCACGCAAGAGCAUCGAGUGCCAGUGUCCCAAAAUCAAGCUGAAUAAGUAAGUAAUACUCAAU-- (((((((.....))).))))((((((...((..(((..((((((..(....).)))))))))..)).))))))........(((.....)))..............-- ( -33.40, z-score = -1.61, R) >consensus GACCAGCUCCCUGCUCGGACGGGGCAAUAUGAUGCUGCUGGUGCCGCGCAAGAGCAUCGAGUGCCAGUGUCCCAAAAUCAAGCUGAACAAGUGAGUAUUACUCAAU__ ..(((((.....))))).....((((...(((((((.((.(((...))).)))))))))..))))........................................... (-24.14 = -23.58 + -0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:44:09 2011