Locus 14649

Sequence ID dm3.chrX
Location 14,578,584 – 14,578,678
Length 94
Max. P 0.838645
window20169

overview

Window 9

Location 14,578,584 – 14,578,678
Length 94
Sequences 3
Columns 122
Reading direction forward
Mean pairwise identity 72.30
Shannon entropy 0.40357
G+C content 0.28780
Mean single sequence MFE -21.00
Consensus MFE -13.32
Energy contribution -13.43
Covariance contribution 0.11
Combinations/Pair 1.05
Mean z-score -1.68
Structure conservation index 0.63
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.86
SVM RNA-class probability 0.838645
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 14578584 94 + 22422827
--AAACAAUCAAAAAUGGAGAUAACAUUUUUGGGUUCUAGGUAUGCCAGCGGAUUUGUUUAAUUUAAAACACAAUUAAUAAGUUAGUACCUUUACU--------------------------
--.......((((((((.......))))))))(((...((((((...(((.(((((((((......))))).)))).....))).))))))..)))-------------------------- ( -18.20, z-score =  -1.68, R)
>droSim1.chrX 11236880 119 + 17042790
ACAAACAAUCAAAAAUGGAGAUAACAUUUUUGGGUUGUAGGUAUGCCAGCAGAUUUGUUUAAUUAAAAUCACAAUUAAUAUCUU--CACUUUAAUGGGGACAACAAAAUAGCAACUUUACU-
....(((((((((((((.......))))))).)))))).((....)).((.(((((.........)))))..........((((--((......))))))..........)).........- ( -20.40, z-score =  -1.45, R)
>droSec1.super_32 30904 117 + 562834
--AAACAAUCAAAAAUGGAGAUAACAUUUUUGGGUUGUAGGUAUGCCAGCAGAUUUGUUUAAUUUAAAACACAAUUAAUAACUU---CCCUUUAAUUGGGAAAACAAAAUACCGUCUUUAUU
--..(((((((((((((.......))))))).)))))).(((((.......(((((((((......))))).))))......((---(((.......)))))......)))))......... ( -24.40, z-score =  -1.91, R)
>consensus
__AAACAAUCAAAAAUGGAGAUAACAUUUUUGGGUUGUAGGUAUGCCAGCAGAUUUGUUUAAUUUAAAACACAAUUAAUAACUU___ACCUUUAAU_GG__AA__AAA___C____UU__U_
..(((((((((((((((.......))))))))).((((.((....)).))))..)))))).............................................................. (-13.32 = -13.43 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:44:08 2011