| Sequence ID | dm3.chrX |
|---|---|
| Location | 14,576,052 – 14,576,144 |
| Length | 92 |
| Max. P | 0.948079 |
| Location | 14,576,052 – 14,576,144 |
|---|---|
| Length | 92 |
| Sequences | 3 |
| Columns | 92 |
| Reading direction | forward |
| Mean pairwise identity | 97.10 |
| Shannon entropy | 0.03993 |
| G+C content | 0.47639 |
| Mean single sequence MFE | -24.50 |
| Consensus MFE | -23.92 |
| Energy contribution | -23.70 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.87 |
| Structure conservation index | 0.98 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.54 |
| SVM RNA-class probability | 0.948079 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 14576052 92 + 22422827 UGUCUUGUUAUAGUAAUAAAAUAAAAUUUAAAAGUACACGCGGUCGGGGGUGUGGUCCUGGUCGUGGGUGGCAAAAAGUGCGGAGAUGGCGA .(((((............................(((.((((..(((((......)))))..)))).)))(((.....))).)))))..... ( -22.40, z-score = -1.59, R) >droSec1.super_32 28374 91 + 562834 UGUCUUGUUAUAGUAAUAAAAUAAAAUUUAAAAGUACGCGCGGUCGGGG-CGUGGUCCUGGUCGUGGGUGGCAAAAAGUGCGGAGGUGGCGA ....(((((((.......................(((.((((..(((((-(...))))))..)))).)))(((.....)))....))))))) ( -26.50, z-score = -2.41, R) >droSim1.chrX 11234385 92 + 17042790 UGUCUUGUUAUAGUAAUAAAAUAAAAUUUAAAAGUACGCGCGGUCGGGGGCGUGGUCCUGGUCGUGGGUGGCAAAAAGUGCGGAGGUGGCGA ....(((((((.......................(((.((((..(((((......)))))..)))).)))(((.....)))....))))))) ( -24.60, z-score = -1.59, R) >consensus UGUCUUGUUAUAGUAAUAAAAUAAAAUUUAAAAGUACGCGCGGUCGGGGGCGUGGUCCUGGUCGUGGGUGGCAAAAAGUGCGGAGGUGGCGA ....(((((((.......................(((.((((..(((((......)))))..)))).)))(((.....)))....))))))) (-23.92 = -23.70 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:44:06 2011