| Sequence ID | dm3.chrX |
|---|---|
| Location | 14,571,192 – 14,571,289 |
| Length | 97 |
| Max. P | 0.679001 |
| Location | 14,571,192 – 14,571,289 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 69.02 |
| Shannon entropy | 0.58156 |
| G+C content | 0.53952 |
| Mean single sequence MFE | -16.68 |
| Consensus MFE | -9.14 |
| Energy contribution | -9.42 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.20 |
| Mean z-score | -0.84 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.679001 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 14571192 97 + 22422827 ACCCAUUCUAAUCCAUCCGACAUGGCCCCAUGCCUCA---ACUAUCUUGCCCCAUUGUUUUCCUUUCGCAGCGUGGAAAGCCAAAAAGCUUUCACUGCUC ..................(.((((....)))).)...---...........................((((....((((((......)))))).)))).. ( -15.90, z-score = -0.70, R) >droAna3.scaffold_12905 518592 87 - 569613 ------CCCCACCCA--CAUCCUGGCGUCCUGCUUGG---CCCACUCUGGCCCAUUGUUUCGCUUUCGAAACGUGGAAAGCCAACAAGCUUUCACUUC-- ------.......((--(.....(((.....))).((---((......))))....((((((....)))))))))((((((......)))))).....-- ( -22.30, z-score = -1.57, R) >droEre2.scaffold_4690 6337061 100 - 18748788 ACCCAUCCUAAUCCAUCCGACGUGGCCCCAACCCCCACCAACUAUCUUGCCCCAUUGUUUUCCGUUCGCAGCGUGGAAAGCCAAAAAGCUUUCACUGCUC .....................((((.........)))).............................((((....((((((......)))))).)))).. ( -15.20, z-score = -0.63, R) >droSec1.super_32 23514 97 + 562834 ACCCAUCCUAAUCCAUCCGACAUGGCCCCAUGCCCCA---ACUAUCUUGCCCCAUUGUUUUCCUUUCGCAGCGUGGAAAGCCAAAAAGCUUUCACUGCUC ....................((((....)))).....---...........................((((....((((((......)))))).)))).. ( -15.70, z-score = -0.77, R) >droSim1.chrX 11229537 97 + 17042790 ACCCAUCCUAAUCCAUCCGACAUGGCCCCAUGCCCCA---ACUAUCUUGCCCCAUUGUUUUCCUUUCGCAGCGUGGAAAGCCAAAAAGCUUUCACUGCUC ....................((((....)))).....---...........................((((....((((((......)))))).)))).. ( -15.70, z-score = -0.77, R) >droVir3.scaffold_12970 11383319 74 + 11907090 --------------------CCCAAC--CCAGCCCAA---ACCCCGCU-CCUCGCUGGCACAUCCCUGCACUGGGCUUAGCCAAAAAGCUAUCACAGCUC --------------------......--..((((((.---.....((.-....))..(((......)))..))))))((((......))))......... ( -15.30, z-score = -0.59, R) >consensus ACCCAUCCUAAUCCAUCCGACAUGGCCCCAUGCCCCA___ACUAUCUUGCCCCAUUGUUUUCCUUUCGCAGCGUGGAAAGCCAAAAAGCUUUCACUGCUC ...................................................................((((....((((((......)))))).)))).. ( -9.14 = -9.42 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:44:05 2011