| Sequence ID | dm3.chrX |
|---|---|
| Location | 14,541,305 – 14,541,406 |
| Length | 101 |
| Max. P | 0.796817 |
| Location | 14,541,305 – 14,541,406 |
|---|---|
| Length | 101 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 53.83 |
| Shannon entropy | 0.76610 |
| G+C content | 0.38713 |
| Mean single sequence MFE | -23.86 |
| Consensus MFE | -5.90 |
| Energy contribution | -8.54 |
| Covariance contribution | 2.64 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.25 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.72 |
| SVM RNA-class probability | 0.796817 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 14541305 101 - 22422827 UCAGAUGCCCUGCACUCUGGGCGUUGGAAUUUUCCAGAUUUAGUUAGUUAGGUAAAAACUUUUAAUUAAAUAUCGCUA-----UCGAAUGUAGACAU-CCCGUUAAA------------- ...((((..(((((.((..(((((((((....)))))((((((((((..((((....))))))))))))))..)))).-----..)).))))).)))-)........------------- ( -24.60, z-score = -2.11, R) >droSim1.chrX 11213951 100 - 17042790 UCUGAUGCCCUGCACUUUGGGCGUUGGAAUCUUACAGAUUUAGUUAGU----UAAAAACUUUUAAUUAAAUAUCGCUA-----UAGAAUGUAGACAUGCCCUUUAAAUU----------- ((..((((((........))))))..)).(((....(((....(((((----((((....)))))))))..)))....-----.)))......................----------- ( -22.50, z-score = -2.09, R) >droSec1.super_20 1126841 100 - 1148123 UUUGAUGCCCUGCACUCUGGGCGUUAGAAUUUUCCAUAUUUAGUUAG----GUAAAAACUUUCAAUUAAAUAUCGCCA-----UCGAAUGUAGACAUGCCCCUUAAAUU----------- ((((((((((........)))))))))).......((((((((((((----((....))))..)))))))))).((..-----((.......))...))..........----------- ( -19.30, z-score = -1.20, R) >droEre2.scaffold_4690 6309353 116 + 18748788 UCUGAUGCCCUGCACUCUGGGCCUUGUCACUUUACUGAAUUGGCCAG----CUUAAAACCUGCGUGUGAAGCUGGCCAAGCUGAUAACUGCUGAUAUACCGAAGAGCUGCCUGCAAAAAC .....(((...(((((((.((...(((((..........((((((((----(((...((....))...)))))))))))((........)))))))..))..)))).)))..)))..... ( -37.80, z-score = -3.53, R) >droAna3.scaffold_13499 178495 87 - 1739075 -------------ACACGUGUCCCUAGACACACACGGUUUUUUUUUCU---AUUUAUUGUUUAUUUUGUAUGUGCGCAAACUGCAAAAAGCAAAUCCGCAACC----------------- -------------....(((((....)))))....((((.........---............(((((((.((......))))))))).((......))))))----------------- ( -15.10, z-score = -0.62, R) >consensus UCUGAUGCCCUGCACUCUGGGCGUUGGAAUUUUACAGAUUUAGUUAGU___GUAAAAACUUUCAAUUAAAUAUCGCCA_____UAGAAUGUAGACAUGCCCCUUAAAU____________ ((((((((((........))))))))))............................................................................................ ( -5.90 = -8.54 + 2.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:44:01 2011