| Sequence ID | dm3.chrX |
|---|---|
| Location | 14,536,532 – 14,536,583 |
| Length | 51 |
| Max. P | 0.996396 |
| Location | 14,536,532 – 14,536,583 |
|---|---|
| Length | 51 |
| Sequences | 5 |
| Columns | 51 |
| Reading direction | forward |
| Mean pairwise identity | 99.22 |
| Shannon entropy | 0.01416 |
| G+C content | 0.52941 |
| Mean single sequence MFE | -15.48 |
| Consensus MFE | -15.20 |
| Energy contribution | -15.40 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.14 |
| Structure conservation index | 0.98 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.79 |
| SVM RNA-class probability | 0.968008 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 14536532 51 + 22422827 CCUCUGAGUGAUAGGCCGUUGUAACUUUCGCAGCCCAAAAUCGGCUCAGAG .(((((((((((.((..(((((.......)))))))...))).)))))))) ( -16.30, z-score = -2.48, R) >droEre2.scaffold_4690 6303819 51 - 18748788 CCUCUGAGUGAUAGGCCGUUGUAACUUUCGCAGCCCAAAAUCGGCUCAGAG .(((((((((((.((..(((((.......)))))))...))).)))))))) ( -16.30, z-score = -2.48, R) >droYak2.chrX 8763889 51 + 21770863 CCUGUGAGUGAUAGGCCGUUGUAACUUUCGCAGCCCAAAAUCGGCUCAGAG .((.((((((((.((..(((((.......)))))))...))).))))).)) ( -12.20, z-score = -0.79, R) >droSec1.super_20 1121938 51 + 1148123 CCUCUGAGUGAUAGGCCGUUGUAACUUUCGCAGCCCAAAAUCGGCUCAGAG .(((((((((((.((..(((((.......)))))))...))).)))))))) ( -16.30, z-score = -2.48, R) >droSim1.chrX 11209096 51 + 17042790 CCUCUGAGUGAUAGGCCGUUGUAACUUUCGCAGCCCAAAAUCGGCUCAGAG .(((((((((((.((..(((((.......)))))))...))).)))))))) ( -16.30, z-score = -2.48, R) >consensus CCUCUGAGUGAUAGGCCGUUGUAACUUUCGCAGCCCAAAAUCGGCUCAGAG .(((((((((((.((..(((((.......)))))))...))).)))))))) (-15.20 = -15.40 + 0.20)
| Location | 14,536,532 – 14,536,583 |
|---|---|
| Length | 51 |
| Sequences | 5 |
| Columns | 51 |
| Reading direction | reverse |
| Mean pairwise identity | 99.22 |
| Shannon entropy | 0.01416 |
| G+C content | 0.52941 |
| Mean single sequence MFE | -18.46 |
| Consensus MFE | -18.60 |
| Energy contribution | -18.80 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.99 |
| Structure conservation index | 1.01 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.93 |
| SVM RNA-class probability | 0.996396 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 14536532 51 - 22422827 CUCUGAGCCGAUUUUGGGCUGCGAAAGUUACAACGGCCUAUCACUCAGAGG (((((((..(((...(((((((....))......)))))))).))))))). ( -19.70, z-score = -3.39, R) >droEre2.scaffold_4690 6303819 51 + 18748788 CUCUGAGCCGAUUUUGGGCUGCGAAAGUUACAACGGCCUAUCACUCAGAGG (((((((..(((...(((((((....))......)))))))).))))))). ( -19.70, z-score = -3.39, R) >droYak2.chrX 8763889 51 - 21770863 CUCUGAGCCGAUUUUGGGCUGCGAAAGUUACAACGGCCUAUCACUCACAGG ((.((((..(((...(((((((....))......)))))))).)))).)). ( -13.50, z-score = -1.40, R) >droSec1.super_20 1121938 51 - 1148123 CUCUGAGCCGAUUUUGGGCUGCGAAAGUUACAACGGCCUAUCACUCAGAGG (((((((..(((...(((((((....))......)))))))).))))))). ( -19.70, z-score = -3.39, R) >droSim1.chrX 11209096 51 - 17042790 CUCUGAGCCGAUUUUGGGCUGCGAAAGUUACAACGGCCUAUCACUCAGAGG (((((((..(((...(((((((....))......)))))))).))))))). ( -19.70, z-score = -3.39, R) >consensus CUCUGAGCCGAUUUUGGGCUGCGAAAGUUACAACGGCCUAUCACUCAGAGG (((((((..(((...(((((((....))......)))))))).))))))). (-18.60 = -18.80 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:44:00 2011