| Sequence ID | dm3.chrX |
|---|---|
| Location | 14,512,732 – 14,512,838 |
| Length | 106 |
| Max. P | 0.665077 |
| Location | 14,512,732 – 14,512,838 |
|---|---|
| Length | 106 |
| Sequences | 5 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 65.48 |
| Shannon entropy | 0.60038 |
| G+C content | 0.33734 |
| Mean single sequence MFE | -18.36 |
| Consensus MFE | -8.12 |
| Energy contribution | -7.56 |
| Covariance contribution | -0.56 |
| Combinations/Pair | 1.53 |
| Mean z-score | -1.24 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.665077 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 14512732 106 + 22422827 ACGUACUUCACUCUUUAUUCACACAAAUUCCUCGUUGCGUAAGAUUAAAGUGCUUACUAUUUUUAAGUCAACGCCUUAAAGGCCUUGA--------UAUUUGCAGCUUUUGAAU .................................((((((((((((....)).))))).........(((((.(((.....))).))))--------)....)))))........ ( -19.20, z-score = -1.37, R) >droEre2.scaffold_4690 6286352 112 - 18748788 ACGCACUUCACUUU--AUGCAUCUAAAUUCCUUUUUGCGUGAGUCUAAAAUGUCUCAUAUUUUUAAGUCAACGGCUUGAAGCCUCUGUGUUUUAGCUAUUUGCAGCUUCUGAAU ......((((....--.((((.(((((.........(((((((.(......).)))))...(((((((.....)))))))))........))))).....)))).....)))). ( -19.83, z-score = -0.21, R) >droYak2.chrX 8745638 100 + 21770863 ACGUACUUCACU------UCAUGUAAAUUCUUUGUUGCGUUAGCUUAAAGUGUUUAAUAUUUUUAAGUCAACGCCUUAAAGGCCUUUA--------GAUUUGCAGCUUCUGAAU ......((((..------...(((((((((((((..(((((..(((((((..........)))))))..)))))..))))).......--------)))))))).....)))). ( -22.61, z-score = -2.31, R) >droSec1.super_20 1104071 104 + 1148123 ACGUACUACAAUGU--AUUCACACAAAUUCCUCGUUGCGUAAGAUUAAAGUGCUUACUAUUUUUAAGUCAACGCCUUAAAGGCCUUGA--------UAUCUGCAACUCCUGAAU ..((((......))--))...............((((((((((((....)).))))).........(((((.(((.....))).))))--------)....)))))........ ( -20.60, z-score = -2.14, R) >droMoj3.scaffold_6473 6093950 105 + 16943266 ---UCUUUCAUAUUCUUCUGUUUUAAAAUGAUCGCAUUAUCAUACUACAGCGUAUCAUGUAGUCCAGUAUACCCAUUUAUUUAUCUUAUU------UAUUUGCAACUUUUGAUA ---..............(((..(((..((((((((..............))).))))).)))..))).......................------.................. ( -9.54, z-score = -0.14, R) >consensus ACGUACUUCACUUU__AUUCAUAUAAAUUCCUCGUUGCGUAAGAUUAAAGUGUUUAAUAUUUUUAAGUCAACGCCUUAAAGGCCUUGA________UAUUUGCAGCUUCUGAAU .................................((((((...((((((((((.....))))))..))))...(((.....))).................))))))........ ( -8.12 = -7.56 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:43:58 2011