| Sequence ID | dm3.chrX |
|---|---|
| Location | 14,511,697 – 14,511,752 |
| Length | 55 |
| Max. P | 0.978726 |
| Location | 14,511,697 – 14,511,752 |
|---|---|
| Length | 55 |
| Sequences | 7 |
| Columns | 57 |
| Reading direction | forward |
| Mean pairwise identity | 75.06 |
| Shannon entropy | 0.48488 |
| G+C content | 0.39406 |
| Mean single sequence MFE | -14.37 |
| Consensus MFE | -10.29 |
| Energy contribution | -9.53 |
| Covariance contribution | -0.77 |
| Combinations/Pair | 1.76 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.72 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.00 |
| SVM RNA-class probability | 0.978726 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 14511697 55 + 22422827 UUUUAUUGCCCUCAUAUGUGGCAUGCAGAUUUAAUGAUGUCAACGAUGGCAAACG-- .....(((((.((.....((((((.((.......))))))))..)).)))))...-- ( -13.50, z-score = -1.42, R) >droEre2.scaffold_4690 6285389 54 - 18748788 UUUUAUUGCCUCUAUAUGUGGCAUGCAGAUUUAAUGAUGUCAACGGUGGCAUUA--- ......((((.((.....((((((.((.......))))))))..)).))))...--- ( -12.70, z-score = -0.99, R) >droYak2.chrX 8744510 54 + 21770863 UUUUAUUGCCCUUGUAUGUGGCAUGCAGAUUUAAUGAUGUCAACGAUGGCAAUA--- ...(((((((.((((...((((((.((.......)))))))))))).)))))))--- ( -16.60, z-score = -2.60, R) >droSec1.super_20 1103025 54 + 1148123 UUUUAUUGCCCCCAUAUGUGGCAUGCAGAUUUAAUGAUGUCAACGAUGGCAAUG--- ...(((((((...((...((((((.((.......))))))))...)))))))))--- ( -12.90, z-score = -0.88, R) >droSim1.chrX 11180194 54 + 17042790 UUUUAUUGCCCUCAUAUGUGGCAUGCAGAUUUAAUGAUGUCAACGAUGGCGAUG--- ...(((((((.((.....((((((.((.......))))))))..)).)))))))--- ( -14.40, z-score = -1.53, R) >dp4.chrXL_group1e 7766794 54 - 12523060 CUUUGUUGCCAUU---UGUGACAUGCAAAUUUAAUGAUGUCAACGAUGAUGGCAAUA ...((((((((((---..((((((.((.......)))))))).....)))))))))) ( -18.00, z-score = -3.72, R) >droGri2.scaffold_15203 3299555 51 + 11997470 UUUUCUUGGUGUUG--CACGGCGCAUAAAAUUAAUGAUGUCG-CUGCGGUGACA--- .........(((..--(.((((((((..........))).))-)))..)..)))--- ( -12.50, z-score = -0.45, R) >consensus UUUUAUUGCCCUUAUAUGUGGCAUGCAGAUUUAAUGAUGUCAACGAUGGCAAUA___ ...(((((((.((.....((((((.((.......))))))))..)).)))))))... (-10.29 = -9.53 + -0.77)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:43:57 2011