| Sequence ID | dm3.chrX |
|---|---|
| Location | 14,494,936 – 14,495,031 |
| Length | 95 |
| Max. P | 0.857728 |
| Location | 14,494,936 – 14,495,031 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 65.96 |
| Shannon entropy | 0.62302 |
| G+C content | 0.49941 |
| Mean single sequence MFE | -28.36 |
| Consensus MFE | -17.46 |
| Energy contribution | -17.18 |
| Covariance contribution | -0.28 |
| Combinations/Pair | 1.48 |
| Mean z-score | -0.67 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.94 |
| SVM RNA-class probability | 0.857728 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 14494936 95 - 22422827 UGGCCAGGUGUUGCCUGCCACUAGGCGCUGCCAUGGCAUUACUAUCACUGGCAGCGGUCUAAUAAUAGUUCCAAAGCCGGCUUUUUCAAUGCGAA ((((.(((.....)))))))...(((((((((((((........))).)))))))((.(((....)))..))...))).((.........))... ( -31.70, z-score = -0.64, R) >droSec1.super_20 1086050 95 - 1148123 GAGCCAGGUGUUGCCUGCCCUUAGGCGCUGCCAUGGCAUUACUAACACUGGAAGCGGUCUAAUAAUAGCACCAAAGCCGGCUUUUUCCGUGCGAA ..(((((((..((((((....))))))..))).))))........(((.((((..((((((....))).)))((((....))))))))))).... ( -29.80, z-score = -0.07, R) >droYak2.chrX 8729226 95 - 21770863 GAGCCAGGUGUUGCCUGCUUUUAGGCGCUGCCAUGGCUUUCGUAUUACUGGAAGCGGUCUAAUUAUAGUUACAAAGCCGGCUUUUUCAAUGUAAA (((((.(((..((((((....))))))..)))..((((((.(((..((((....))))(((....))).))))))))))))))............ ( -30.10, z-score = -1.41, R) >droEre2.scaffold_4690 6270129 91 + 18748788 GCGCCAGGUGUUGCCUGCUUUCGGGCGCAGCCAUGGCGUUACUUUUGCUGGAAGCGGUCUAAUUAUAGUUCCAAAGCCGGCUUUUUCAGUG---- (((((((((..((((((....))))))..))).)))))).......(((((....((.(((....)))..))....)))))..........---- ( -31.90, z-score = -0.88, R) >droWil1.scaffold_181150 623584 75 + 4952429 ----UAAACAUUGUCUAUUUUUAGGCGUUGCCAUUGGCCAGCCA--GCCAGC--CAAGCUUAUCCGGCUUUUAUAGAUGGUUG------------ ----........(((((....)))))...(((((((((......--)))(((--(..........))))......))))))..------------ ( -18.30, z-score = -0.34, R) >consensus GAGCCAGGUGUUGCCUGCUUUUAGGCGCUGCCAUGGCAUUACUAUCACUGGAAGCGGUCUAAUAAUAGUUCCAAAGCCGGCUUUUUCAAUG__AA ..((((((((.((((((....)))))).)))).))))..........((((.......(((....)))........))))............... (-17.46 = -17.18 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:43:55 2011