Locus 14635

Sequence ID dm3.chrX
Location 14,494,365 – 14,494,475
Length 110
Max. P 0.694144
window20152 window20153

overview

Window 2

Location 14,494,365 – 14,494,466
Length 101
Sequences 5
Columns 102
Reading direction reverse
Mean pairwise identity 90.04
Shannon entropy 0.17968
G+C content 0.44320
Mean single sequence MFE -28.98
Consensus MFE -25.40
Energy contribution -25.64
Covariance contribution 0.24
Combinations/Pair 1.18
Mean z-score -1.22
Structure conservation index 0.88
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.09
SVM RNA-class probability 0.539913
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 14494365 101 - 22422827
UUAGUCCGCCUGG-UCAGCAAUUGCGGCACUUGCUCGCUUAUUGUCCACAGGCGAAAAUAGUUUGCGACUGAUGAUCGGAUGCAUUUAGCUAAUAAUUUAGA
......((((((.-...(((((.(((((....)).)))..)))))...))))))....(((((((((.(((.....))).))))...))))).......... ( -30.60, z-score =  -1.61, R)
>droSim1.chrX 11186131 101 - 17042790
UUAGUUCGCCUGG-UCAGCAAUUGCGGCACUUGCUCGCUUAUUGUCCACAGGCGAAAAUAGUUUGCCACUGAUGAUCGGAUGCAUUUAGCUAAUAAUUUAGA
....((((((((.-...(((((.(((((....)).)))..)))))...))))))))..((((((((..(((.....)))..)))...))))).......... ( -30.70, z-score =  -1.86, R)
>droSec1.super_20 1085487 101 - 1148123
UUAGUUCGCCUGG-UCAGCAAUUGCGGCACUUGCUCGCUUAUUGUCCACAGGCGAAAAUAGUUUGCAACUGAUGAUCGGAUGCAUUUAGCUAAUAAUUUAGA
....((((((((.-...(((((.(((((....)).)))..)))))...))))))))..(((((((((.(((.....))).))))...))))).......... ( -33.70, z-score =  -2.91, R)
>droYak2.chrX 8728601 101 - 21770863
UUAUUCCGCCUGC-UCAGCAGUUGCGGCACUCGCUCGCUUAUUGUCCGCAAGCGAAAAUAGUUUGCGACUGAUGAUCGGAUGCAUUUAGCUAAUAAUUUAGA
.......(((((.-(((.(((((((((.(((...((((((.........))))))....)))))))))))).))).)))..))......((((....)))). ( -26.70, z-score =  -0.11, R)
>droEre2.scaffold_4690 6269516 97 + 18748788
-----CUAUAGGCACUAGCAAUUGCGGCACUGGCUCGCUCAUUGUCCACAGGCGAAAAUAGCUUGCGACUGAUGAUCGGAUGCAUUUAGCUAAUAAUUUAGA
-----(((.......((((((.((((((....))(((.((((((((..(((((.......))))).))).))))).))).)))).)).))))......))). ( -23.22, z-score =   0.37, R)
>consensus
UUAGUCCGCCUGG_UCAGCAAUUGCGGCACUUGCUCGCUUAUUGUCCACAGGCGAAAAUAGUUUGCGACUGAUGAUCGGAUGCAUUUAGCUAAUAAUUUAGA
......((((((.....(((((.(((((....)).)))..)))))...))))))....(((((((((.(((.....))).))))...))))).......... (-25.40 = -25.64 +   0.24)

alignment

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secondary structure

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dotplot

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Window 3

Location 14,494,372 – 14,494,475
Length 103
Sequences 5
Columns 103
Reading direction reverse
Mean pairwise identity 91.84
Shannon entropy 0.15212
G+C content 0.46388
Mean single sequence MFE -32.68
Consensus MFE -25.80
Energy contribution -26.56
Covariance contribution 0.76
Combinations/Pair 1.11
Mean z-score -1.96
Structure conservation index 0.79
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.43
SVM RNA-class probability 0.694144
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 14494372 103 - 22422827
UCGCAUCUAUUAGUCCGCCUGGUCAGCAAUUGCGGCACUUGCUCGCUUAUUGUCCACAGGCGAAAAUAGUUUGCGACUGAUGAUCGGAUGCAUUUAGCUAAUA
..(((((((((((((((((((....(((((.(((((....)).)))..)))))...))))))......(....))))))))....))))))............ ( -35.50, z-score =  -2.65, R)
>droSim1.chrX 11186138 103 - 17042790
UCGCAUCUAUUAGUUCGCCUGGUCAGCAAUUGCGGCACUUGCUCGCUUAUUGUCCACAGGCGAAAAUAGUUUGCCACUGAUGAUCGGAUGCAUUUAGCUAAUA
..((((((((((.((((((((....(((((.(((((....)).)))..)))))...))))))))..((((.....)))).)))).))))))............ ( -34.40, z-score =  -2.62, R)
>droSec1.super_20 1085494 103 - 1148123
UCGCAUCUAUUAGUUCGCCUGGUCAGCAAUUGCGGCACUUGCUCGCUUAUUGUCCACAGGCGAAAAUAGUUUGCAACUGAUGAUCGGAUGCAUUUAGCUAAUA
..((..(((((..((((((((....(((((.(((((....)).)))..)))))...)))))))))))))..((((.(((.....))).))))....))..... ( -35.10, z-score =  -2.92, R)
>droYak2.chrX 8728608 103 - 21770863
UCGCAUCUAUUAUUCCGCCUGCUCAGCAGUUGCGGCACUCGCUCGCUUAUUGUCCGCAAGCGAAAAUAGUUUGCGACUGAUGAUCGGAUGCAUUUAGCUAAUA
..(((((((((((.((((((((...))))..))))((.((((..(((.(((.(((....).)).))))))..)))).))))))).))))))............ ( -31.50, z-score =  -1.20, R)
>droEre2.scaffold_4690 6269523 99 + 18748788
UCGCAUCUACUA-UAGGC---ACUAGCAAUUGCGGCACUGGCUCGCUCAUUGUCCACAGGCGAAAAUAGCUUGCGACUGAUGAUCGGAUGCAUUUAGCUAAUA
..((((((....-...((---....))....(((((....)).)))((((((((..(((((.......))))).))).)))))..))))))............ ( -26.90, z-score =  -0.41, R)
>consensus
UCGCAUCUAUUAGUCCGCCUGGUCAGCAAUUGCGGCACUUGCUCGCUUAUUGUCCACAGGCGAAAAUAGUUUGCGACUGAUGAUCGGAUGCAUUUAGCUAAUA
...............((((((....(((((.(((((....)).)))..)))))...))))))....(((((((((.(((.....))).))))...)))))... (-25.80 = -26.56 +   0.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:43:54 2011