| Sequence ID | dm3.chrX |
|---|---|
| Location | 14,490,468 – 14,490,534 |
| Length | 66 |
| Max. P | 0.713062 |
| Location | 14,490,468 – 14,490,534 |
|---|---|
| Length | 66 |
| Sequences | 8 |
| Columns | 70 |
| Reading direction | reverse |
| Mean pairwise identity | 57.10 |
| Shannon entropy | 0.84078 |
| G+C content | 0.37132 |
| Mean single sequence MFE | -12.52 |
| Consensus MFE | -2.62 |
| Energy contribution | -2.94 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.21 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.48 |
| SVM RNA-class probability | 0.713062 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 14490468 66 - 22422827 ACAAGCCACUCAAAAUCGGUUUAUAACCGGUUUGCACCAUUUUUUUUUUUUGAGU-AGCAAUAA---AAA ....((.((((((((..(((.....)))(((....))).........))))))))-.)).....---... ( -15.60, z-score = -3.51, R) >droSim1.chrX 11182256 59 - 17042790 ACUAACCACUCAAAAUCGGCUUAUAACCGGUUAA-------UUUGCAAUUUGAGU-GGCAAUAA---AAA .....((((((((((((((.......)))))...-------.......)))))))-))......---... ( -14.80, z-score = -3.36, R) >droSec1.super_20 1081550 59 - 1148123 ACUAACCACUCAAAAUCGGCUUAUAACCGGUUAA-------UUUGCAAUUUGAGU-GGCAAUAA---AAA .....((((((((((((((.......)))))...-------.......)))))))-))......---... ( -14.80, z-score = -3.36, R) >droYak2.chrX 8724551 59 - 21770863 ACUAACCACUCGAAAUCGGCUUAUAACCGGUUUG-------CAAGUGGUUUUAGC-GGCAAUAC---AAA ...(((((((.((((((((.......))))))).-------).))))))).....-........---... ( -15.70, z-score = -2.22, R) >droEre2.scaffold_4690 6265532 59 + 18748788 ACGAACCACUCGAAAUCGGCUUAUAACAGGUUUG-------CAAUUGGUCUCAGU-AGCAAUAC---AAA ..((((((..((....))((..((.....))..)-------)...)))).)).((-(....)))---... ( -8.60, z-score = -0.19, R) >dp4.chrXL_group1e 7741501 69 + 12523060 AAAAUCCACCCAUAACCGGUUCACAGUCGGUUUCGGUUAAAUGCUUUCCUCGAAA-GUUAAUGAUUUAAA .(((((.(((...((((((.......))))))..))).....((((((...))))-))....)))))... ( -12.80, z-score = -1.29, R) >droPer1.super_17 193475 66 + 1930428 ---AUCCACCCAUAACCGGUUCACAGUCGGUUUCGGUUAAAUGCUAUCCUCGAAA-GUUAAUGAUUUAAA ---......((..((((((.......))))))..))((((((.(......(....-).....))))))). ( -9.60, z-score = -0.01, R) >droGri2.scaffold_15203 3026801 67 + 11997470 ACAGGCCACUCAGAAC---UCUAUAGGCUAUUCAAAUCAAUAGUUUUCAUCGUUUCCUUUGCGAUAUCAA ...((((....((...---.))...))))...................(((((.......)))))..... ( -8.30, z-score = -0.80, R) >consensus ACAAACCACUCAAAAUCGGCUUAUAACCGGUUUA_______UGUUUUCUUUGAGU_GGCAAUAA___AAA .............((((((.......))))))...................................... ( -2.62 = -2.94 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:43:53 2011