| Sequence ID | dm3.chrX |
|---|---|
| Location | 14,483,045 – 14,483,144 |
| Length | 99 |
| Max. P | 0.824430 |
| Location | 14,483,045 – 14,483,144 |
|---|---|
| Length | 99 |
| Sequences | 5 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 68.04 |
| Shannon entropy | 0.57532 |
| G+C content | 0.53518 |
| Mean single sequence MFE | -27.47 |
| Consensus MFE | -13.52 |
| Energy contribution | -14.16 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.33 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.81 |
| SVM RNA-class probability | 0.824430 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 14483045 99 - 22422827 ----UUUCCAUACCGCUUCGCCGGCCUCAUACAACCUCUGUGUGAGUUUCUCUGCAAGGAAAAACCACUAUUUGCCGGUAUUGCGC-AUUCGCCGCGUGGUCGG ----...((..(((((...((((((((((((((.....))))))))(((((......)))))...........))))))...((((-....).)))))))).)) ( -32.00, z-score = -2.49, R) >droSim1.chrX 11163838 101 - 17042790 CUUUUUACCAUCCCGCUCCGCCGGCCUCAUACAA-CUCUGUGUGAGAUUCUCUGC-AGGAAAAACCACUAUUUGCCGGUAUUGCGC-AUUCGCCGCGUGGUCGG .......((..(((((...((((((((((((((.-...)))))))).........-.((.....)).......))))))...(((.-...))).))).))..)) ( -32.70, z-score = -2.70, R) >droSec1.super_20 1074437 101 - 1148123 CUUUUUACCAUCCCGCUCCGCCGGCCUCAUACAA-CUCUGUGUGAGAUUCUCUGU-AGGAAAAACCACUAUUUGCCGGUAUUGCGC-AUUCGCCGCGUGGUCGG .......((..(((((...((((((((((((((.-...)))))))).........-.((.....)).......))))))...(((.-...))).))).))..)) ( -32.70, z-score = -2.91, R) >droYak2.chrX 8717551 85 - 21770863 ----------------CCCCUCCGCUCCGGGCAG-AGUUGUCUGAGAUUCUCUGC-AGGAAAAACCACUAUUUGCCGGUAUUGCUC-AUUCGCCGCGUGGUCGG ----------------.((..((((.((((((((-((..(((...))).))))))-.((.....))........))))....((..-....))...))))..)) ( -25.20, z-score = -0.33, R) >droPer1.super_17 186655 99 + 1930428 --AUAUCGAAUACCAAAUGGGGCAUGCCACACCACUACCGUUGUACCUACCCC---ACAAAAUACCAGUAUUUGCCGUUAUAAAGCUCUCCGUCGCCUGGAUGG --....(((((((....(((((..(((.((.........)).)))....))))---)..........)))))))...............(((((.....))))) ( -14.74, z-score = 1.75, R) >consensus ___UUUACCAUACCGCUCCGCCGGCCUCAUACAA_CUCUGUGUGAGAUUCUCUGC_AGGAAAAACCACUAUUUGCCGGUAUUGCGC_AUUCGCCGCGUGGUCGG ............(((..((((((((((((((((.....)))))))).................(((..........)))............)))).)))).))) (-13.52 = -14.16 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:43:51 2011