Locus 14628

Sequence ID dm3.chrX
Location 14,465,145 – 14,465,245
Length 100
Max. P 0.708415
window20143

overview

Window 3

Location 14,465,145 – 14,465,245
Length 100
Sequences 6
Columns 105
Reading direction forward
Mean pairwise identity 68.48
Shannon entropy 0.58266
G+C content 0.28593
Mean single sequence MFE -14.89
Consensus MFE -5.37
Energy contribution -6.23
Covariance contribution 0.86
Combinations/Pair 1.25
Mean z-score -1.80
Structure conservation index 0.36
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.47
SVM RNA-class probability 0.708415
Prediction RNA
WARNING Out of training range. z-scores are NOT reliable.

Download alignment: ClustalW | MAF

>dm3.chrX 14465145 100 + 22422827
UUUGCAGCGUUUUUUUCCAAUUUUUUAAUUUUAGAAAAACGC-----AGAAUAUUUUUUCUUUGCCAUAUUUGUUUUUUUUUUUUUAGCCUUAGCUUCUUUUGCC
...(((((((((((((..((((....))))..))))))))))-----((((......)))).))).....................(((....)))......... ( -14.90, z-score =  -1.51, R)
>droEre2.scaffold_4690 6241767 89 - 18748788
UUUGCAGCGUUUUUUUCGAAUUUUUUAAUUUUAGAAAAACGC-----AGCAUACUUUUUCUUCCCCUCUU-----------UUUUUGGCCUGAGCUUCUUUCGCC
..(((.((((((((((.(((((....))))).))))))))))-----.)))...................-----------.....(((..(((...)))..))) ( -18.90, z-score =  -2.92, R)
>droYak2.chrX 8698947 77 + 21770863
UUUGCAGCGUUUUUU-CCAAUUUUUUAAUUUUAGAAAAACGC-----AGAAUAUUUUUU----------------------UUUUUAGCCUUAGCUUCUUUCGCC
...((.(((((((((-..((((....))))...)))))))))-----............----------------------.....(((....)))......)). ( -11.50, z-score =  -0.86, R)
>droSec1.super_20 1056927 91 + 1148123
UUUGCAGCGUUUUUUUCCAAUUUUUUAAUUUUAGAAAAACGC-----AGAAUAUUUUUUCUUUGCCAUAUUU---------UUUUUAACCUUAGCUUCUUUUGCC
...(((((((((((((..((((....))))..))))))))))-----((((......)))).))).......---------............((.......)). ( -14.70, z-score =  -2.32, R)
>droSim1.chrX_random 4977812 91 - 5698898
UUUGCAGCGUUUUUUUCCAAUUUUUUAAUUUUAGAAAAACGC-----AGAAUAUUUUUUCUUUGCCAUAUUU---------UUUUUAACCUUAGCUUCUUUUGCC
...(((((((((((((..((((....))))..))))))))))-----((((......)))).))).......---------............((.......)). ( -14.70, z-score =  -2.32, R)
>droGri2.scaffold_15203 3010132 99 - 11997470
------AUUAUUGCCGAUAAAUUUAUAACAUAGAAGAUACAUCAGCAAGGGUAUUUCAUCUUUGGCAUACCGACGAUAAUUUUAUUUCUAGUCGUUUUUUUUAUA
------....((((.(((..((((..........))))..))).)))).(((((.(((....))).)))))((((((.............))))))......... ( -14.62, z-score =  -0.86, R)
>consensus
UUUGCAGCGUUUUUUUCCAAUUUUUUAAUUUUAGAAAAACGC_____AGAAUAUUUUUUCUUUGCCAUAUUU_________UUUUUAGCCUUAGCUUCUUUUGCC
......((((((((((..((((....))))..))))))))))...................................................((.......)). ( -5.37 =  -6.23 +   0.86)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:43:46 2011