| Sequence ID | dm3.chrX |
|---|---|
| Location | 14,439,210 – 14,439,318 |
| Length | 108 |
| Max. P | 0.790763 |
| Location | 14,439,210 – 14,439,318 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 61.48 |
| Shannon entropy | 0.72830 |
| G+C content | 0.42262 |
| Mean single sequence MFE | -24.67 |
| Consensus MFE | -11.03 |
| Energy contribution | -11.87 |
| Covariance contribution | 0.83 |
| Combinations/Pair | 1.00 |
| Mean z-score | -0.83 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.70 |
| SVM RNA-class probability | 0.790763 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 14439210 108 - 22422827 --------CUACAUUUUAACAACUUUUUUUGGUACAAUUUUGUACACCAUUGUGGCGAAUAUCCGAUUAUGACCACACUUUUUGCCCAGUGCAGUUCGCAUUGCAGCUGCAACUGA --------.......................(((((....))))).....(((((...(((......)))..))))).........((((((((((.((...)))))))).)))). ( -23.10, z-score = -1.28, R) >droSim1.chrX 11126510 107 - 17042790 --------CUACAUUUUAACAAC-UUUUUCGGUAGAAUAUUGUACACCAUUGUGGCGAAUAUUCGAUUAUGACCACACUUUUCGCGCAGUGCAGUUGGCAUUGCAGCUGCAACUGA --------...............-......(((.(((((((((.(((....))))).))))))).......)))............(((((((((((......))))))).)))). ( -24.20, z-score = -0.61, R) >droSec1.super_20 1037069 107 - 1148123 --------CUACAUUUUAACAAC-UUUUUCGGUUGAAUAUUGUACACCAUUGUGUCGAAUAUCCGAUUAUGACCACACUUUUCGCGCAGUGCAGUUGGCAUUGCAGCUGCAACUGA --------...............-....(((((((............(((...((((......)))).)))............(((((((((.....))))))).))..))))))) ( -24.00, z-score = -0.69, R) >droYak2.chrX 8681533 99 - 21770863 -----------CUGCCAAGGGAC-UUUUCUAACAACUUCUUUUGC-----UAGAAUGAGCUUCUGAAUGUGAGCACACGUUUCGCUCAGUGCAAUUGGCAUCGCAGCUGCAAGUGA -----------.((((((..(((-..(((((.(((......))).-----)))))(((((....(((((((....))))))).))))))).)..))))))((((........)))) ( -26.90, z-score = 0.14, R) >droEre2.scaffold_4690 6227413 104 + 18748788 CUACUUGACUACACUUUAGCAAC-UUCUUUGGCGGAAUUUGGUUCCUCUUUAGCCCGAGU-----------ACCACGCGUUUCGCCCAGUGCAGUUAGCAUCGCAGCUGCAACUGA ....(((.(((.....)))))).-......((((((((.((((..(((........))).-----------))))...))))))))((((((((((.((...)))))))).)))). ( -29.80, z-score = -1.57, R) >droAna3.scaffold_13248 2166958 97 - 4840945 ------------------CUAUACUUUCCUCUUCAACUUUUAUAUAGAUAUUGAAUUAAAGCUUAAAGCUGUACCCAUUUAUU-UUCAGUGCAGUGGCUGUUGCAGCUGCAACUGA ------------------...(((.......(((((..(((....)))..)))))....(((.....))))))..........-.((((((((((.((....)).))))).))))) ( -20.00, z-score = -0.96, R) >consensus ________CUACAUUUUAACAAC_UUUUUUGGUAGAAUUUUGUACACCAUUGGGACGAAUAUCCGAUUAUGACCACACUUUUCGCCCAGUGCAGUUGGCAUUGCAGCUGCAACUGA ......................................................................................(((((((((((......))))))).)))). (-11.03 = -11.87 + 0.83)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:43:44 2011